View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-2 (Length: 689)
Name: NF0737D-Insertion-2
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 8 - 564
Target Start/End: Original strand, 52874615 - 52875171
Alignment:
| Q |
8 |
atggagtgacttttaaatcatttggtatatcatgatgtaaagttacactttcatttaactagtgttttaacgatgcttaaattggaaatttataatcaat |
107 |
Q |
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| T |
52874615 |
atggagtgacttttaaatcatttggtatatcatgatgtaaagttacactttcatttaactagtgttttaacgatgcttaaattggaaatttataatcaat |
52874714 |
T |
|
| Q |
108 |
gaattacctcatcatgaatgctactatgcctttcctttcatctttgactaccttctatatgattagacatcaaccattgcaatcagctaactattaggcc |
207 |
Q |
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| T |
52874715 |
gaattacctcatcatgaatgctactatgcctttcctttcatctttgactaccttctatatgattagacatcaatcattgcaatcagctaactattaggtc |
52874814 |
T |
|
| Q |
208 |
ttagactagagttattattcaccaagcaagtcttattctcatcttgtgttcacctagtttaatgattgcaagtttatttagttattttactactgaatct |
307 |
Q |
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| T |
52874815 |
ttatactagagttattattcaccaagcaagtcttattctcatcttgtgttcacctagtttaatgattgcaagtttatttagttattttactactgaatct |
52874914 |
T |
|
| Q |
308 |
taaaggatgttagtttatatatgtgtgtttcttttttattttagggatcttccccggctgaaagagtgacaaatgattctgaaaacgaaattgttaacat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52874915 |
taaaggatgttagtttatatatgtgtgtttcttttttattttagggatcttccactgctgaaagagtgacaaatgattctgaaaacgaaattgttaacat |
52875014 |
T |
|
| Q |
408 |
agatacaaagggggctatcatctttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcatcttggtttatctggatattgattgta |
507 |
Q |
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| T |
52875015 |
agatacaaagggggctatcatctttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcatcttggtttatctggatattgattgta |
52875114 |
T |
|
| Q |
508 |
cttttctgcattggtggtgttgaggtaagatagctttatttcattgattttatcccc |
564 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52875115 |
cttttctgcattggtggtgttgaggtaaggtagctttatttcattgattttatcccc |
52875171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 430 - 535
Target Start/End: Complemental strand, 257126 - 257021
Alignment:
| Q |
430 |
tttgtcattacggcttctacgtttcttgtgctattatttttcttcatgtcatcttggtttatctggatattgattgtacttttctgcattggtggtgttg |
529 |
Q |
| |
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|||||||| || || ||||| |||||||| || || || ||||||||||||||||||||||| ||| | | ||||||||||||||||||| |||| ||| |
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| T |
257126 |
tttgtcataacagcatctacctttcttgttctgttgttcttcttcatgtcatcttggtttatgtggttgctcattgtacttttctgcattgctggtattg |
257027 |
T |
|
| Q |
530 |
aggtaa |
535 |
Q |
| |
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|||||| |
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|
| T |
257026 |
aggtaa |
257021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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