View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-3 (Length: 792)
Name: NF0737D-Insertion-3
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-3 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 123 - 388
Target Start/End: Original strand, 15927977 - 15928240
Alignment:
| Q |
123 |
ttatcacaaaatatattcatccattcatctctctccctttctttactctttctcatttgacgacaatgacttataacaagattgaacttgtgtaatacat |
222 |
Q |
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| T |
15927977 |
ttatcacaaaatatattcatccatttatctctctccctttctttactctttctcatttgacgacaatgacttataacaagatagaacttgt--aatacat |
15928074 |
T |
|
| Q |
223 |
atgatgacgaagcacatatggtgactccacaagtcatgataataattgaaaaagtaatgtttgacaaagtcttcttcatggtgatctagtctcacatcaa |
322 |
Q |
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| T |
15928075 |
atgatgacgaagcacatatgttgactccacaagtcatgataataattgaaaaagtaatgtttgacaaagtcttcttcatggtgatctagtctcacatcaa |
15928174 |
T |
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| Q |
323 |
tatattataaattataaaataagtttaattggtttacacatatgaatattaaattgataactagtg |
388 |
Q |
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| T |
15928175 |
tatattataaattataaaataagtttaattggtttacacatatgaataataaattgataactagtg |
15928240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 538 - 792
Target Start/End: Original strand, 15928390 - 15928643
Alignment:
| Q |
538 |
ccaatacggttattttaagtaattagaagtaattaacacacaacaaaaaatacttcgagggtaataatatttacaagcaatatgttacacaagtattaaa |
637 |
Q |
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| T |
15928390 |
ccaatacggttattttaagtaattagaagtaattaacacacaacaaaaaatacttcgagggtaataatatttacaagcaatatgttacacaagtattaaa |
15928489 |
T |
|
| Q |
638 |
ggaaacatcctcgtatgtttctttccgagcaattagaagtaattaacacacaacaaaaaataatttgaggggtaataatatttaaaagcaatatgttacg |
737 |
Q |
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| T |
15928490 |
ggaaacatcctcgtatgtttctttccaagcaattagaagtaattaacacacaacaaaaaataatttga-gggtaataatatttataagcaatatgttacg |
15928588 |
T |
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| Q |
738 |
caagtatcaaaggaaacatcctcgtatgtttctttcctattctaaccattttcta |
792 |
Q |
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| T |
15928589 |
caagtatcaaaggaaacatcctcgtatgattctttcctattctaaccattttcta |
15928643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 15927827 - 15927945
Alignment:
| Q |
8 |
acgagaaacaagaagagttgattatattgtgttgatttgagatgttgaagtgtgctcctcttcaagatttacagtttgattatctacgatctcaatttta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15927827 |
acgagaaacaagaagagttgattatattgtgttgatttgagatgttgaagtgtgctcctcttcaagatttacggtttgattatctacgatctcaatttta |
15927926 |
T |
|
| Q |
108 |
atgggctagtttagcttat |
126 |
Q |
| |
|
|||| || |||||||||| |
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| T |
15927927 |
gtgggttaatttagcttat |
15927945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 546 - 663
Target Start/End: Original strand, 15928982 - 15929099
Alignment:
| Q |
546 |
gttattttaagtaattagaagtaattaacacacaacaaaaaatacttcgagggtaataatatttacaagcaatatgttacacaagtattaaaggaaacat |
645 |
Q |
| |
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||||||||||| |||||| ||||||||||||||||||| || | ||| |||||||||||||||||||| |||||| ||| || ||||| |||||||| || |
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| T |
15928982 |
gttattttaagcaattagtagtaattaacacacaacaagaagtcctttgagggtaataatatttacaaacaatatattatactagtatcaaaggaaatat |
15929081 |
T |
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| Q |
646 |
cctcgtatgtttctttcc |
663 |
Q |
| |
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|| || |||||||||| |
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| T |
15929082 |
tttcctaggtttctttcc |
15929099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 453 - 508
Target Start/End: Original strand, 15928305 - 15928360
Alignment:
| Q |
453 |
gtatagctgaaaaagattagttatacacgactattataaaacatccatgaattagg |
508 |
Q |
| |
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| T |
15928305 |
gtatagctgaaaaagattagttatacacgactattctaaaacatccatgaattagg |
15928360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 665 - 778
Target Start/End: Original strand, 15928991 - 15929103
Alignment:
| Q |
665 |
agcaattagaagtaattaacacacaacaaaaaataatttgaggggtaataatatttaaaagcaatatgttacgcaagtatcaaaggaaacatcctcgtat |
764 |
Q |
| |
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||||||||| ||||||||||||||||||| || | |||||||| |||||||||||| || |||||| ||| | |||||||||||||| || || || |
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| T |
15928991 |
agcaattagtagtaattaacacacaacaagaagtcctttgaggg-taataatatttacaaacaatatattatactagtatcaaaggaaatattttcctag |
15929089 |
T |
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| Q |
765 |
gtttctttcctatt |
778 |
Q |
| |
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|||||||||||||| |
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|
| T |
15929090 |
gtttctttcctatt |
15929103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 15930005 - 15930073
Alignment:
| Q |
123 |
ttatcacaaaatatattcatccattcatctctctccctttctttactctttctcatttgacgacaatga |
191 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||| ||| |||| || ||||||||||||||||||||| |
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| T |
15930005 |
ttatcacaaaatatattcatccattgatctttctacctatcttatctatttctcatttgacgacaatga |
15930073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 9368285 - 9368196
Alignment:
| Q |
281 |
gtttgacaaagtcttcttcatggtgatctagtctcacatcaatatattataaattataaaataagtttaattggtttacacatatgaata |
370 |
Q |
| |
|
|||| ||||||||||||| | | || ||||| ||||||||| ||||| |||| | ||||||||||||||||||| ||||||||||||| |
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|
| T |
9368285 |
gttttacaaagtcttcttgaagacgaactagtgtcacatcaacatattttaaactctaaaataagtttaattggtccacacatatgaata |
9368196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 580
Target Start/End: Complemental strand, 9368018 - 9367983
Alignment:
| Q |
545 |
ggttattttaagtaattagaagtaattaacacacaa |
580 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
9368018 |
ggttattttaagcaattagaagtaattaacacacaa |
9367983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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