View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-6 (Length: 580)
Name: NF0737D-Insertion-6
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-6 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 561; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 12993726 - 12994298
Alignment:
| Q |
8 |
ctaacaatcctagtcccacacacaacacaacattgcttcacttcaaaagattggaccagctgcaagaatctcttctgtgaggttgtcatcaccctttcca |
107 |
Q |
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| T |
12993726 |
ctaacaatcctagtcccacacacaacacaacattgcttcacttcaaaagattggaccagctgcaagaatctcttctgtgaggttgtcatcaccctttcca |
12993825 |
T |
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| Q |
108 |
attttgtagttggtgaaggtttcaaaattcttcttgaacaatccacccagcttcaacaatgtcgcattgtaggcgtttttgtctgaccactgcaatccat |
207 |
Q |
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| T |
12993826 |
attttgtagttggtgaaggtttcaaaattcttcttgaacaatccacccagcttcaacaatgtcgcattgtaggcgtttttgtctgaccactgcaatccat |
12993925 |
T |
|
| Q |
208 |
caaaaataccaattattaatatcccgtttctaaattacaagtgttttattaccacgcaaggtgaataaacgaactgttttaggataacttaccgcattga |
307 |
Q |
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| T |
12993926 |
caaaaataccaattattaatatcccgtttctaaattacaagtgttttattaccacgcaaggtgaataaacgaactgttttaggataacttaccgcattta |
12994025 |
T |
|
| Q |
308 |
taggatccagaatttctgaagggacaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccatt |
407 |
Q |
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| T |
12994026 |
taggatccagaatttctgaagggacaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccatt |
12994125 |
T |
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| Q |
408 |
gtgaatagcatcaattatttttctagtataacttagtttgatacgattcccggtaccatagctgcattaatttgacacagacaagaacatcatgtttagc |
507 |
Q |
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| T |
12994126 |
gtgaatagcatcaattatttttctagtataacttagtttgatacgattcccggtaccatagctggattaatttgacatagacaagaacatcatgtttagc |
12994225 |
T |
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| Q |
508 |
gcgaaaaaacaaagaaactcaacaatattgcaaagagaagcactaaaagcatacctgccaccggaccaaccag |
580 |
Q |
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| T |
12994226 |
gcgaaaaaacaaagaaactcaacaatattgcaaagagaagcactaaaagcatacctgccaccggaccaaccag |
12994298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 8 - 580
Target Start/End: Original strand, 13068375 - 13068947
Alignment:
| Q |
8 |
ctaacaatcctagtcccacacacaacacaacattgcttcacttcaaaagattggaccagctgcaagaatctcttctgtgaggttgtcatcaccctttcca |
107 |
Q |
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| T |
13068375 |
ctaacaatcctagtcccacacacaacacaacattgcttcacttcaaaagattggaccagctgcaagaatctcttctgtgaggttgtcatcaccctttcca |
13068474 |
T |
|
| Q |
108 |
attttgtagttggtgaaggtttcaaaattcttcttgaacaatccacccagcttcaacaatgtcgcattgtaggcgtttttgtctgaccactgcaatccat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13068475 |
attttgtagttggtgaaggtttcaaaattcttcttgaacaatccacccagcttcaacaatgtcgcattgtaggcgtttttgtctgaccactggaatccat |
13068574 |
T |
|
| Q |
208 |
caaaaataccaattattaatatcccgtttctaaattacaagtgttttattaccacgcaaggtgaataaacgaactgttttaggataacttaccgcattga |
307 |
Q |
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| T |
13068575 |
caaaaataccaattattaatatcccgtttctaaattagaagtgttttattaccacgcaaggtgaataaacgaactgttttaggataacttaccgcattta |
13068674 |
T |
|
| Q |
308 |
taggatccagaatttctgaagggacaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccatt |
407 |
Q |
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| T |
13068675 |
taggatccagaatttctgaagggacaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccatt |
13068774 |
T |
|
| Q |
408 |
gtgaatagcatcaattatttttctagtataacttagtttgatacgattcccggtaccatagctgcattaatttgacacagacaagaacatcatgtttagc |
507 |
Q |
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| T |
13068775 |
gtgaatagcatcaattatttttctagtataacttagtttgatacgattcccggtaccatagctggattaatttgacatagacaagaacatcatgtttagc |
13068874 |
T |
|
| Q |
508 |
gcgaaaaaacaaagaaactcaacaatattgcaaagagaagcactaaaagcatacctgccaccggaccaaccag |
580 |
Q |
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| T |
13068875 |
gcgaaaaaacaaagaaactcaacaatattgcaaagagaagcactaaaagcatacctgccaccggaccaaccag |
13068947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 50 - 203
Target Start/End: Original strand, 28135588 - 28135738
Alignment:
| Q |
50 |
tcaaaagattggaccagctgcaagaatctcttctgtgaggttgtcatcaccctttccaattttgtagttggtgaaggtttcaaaattcttcttgaacaat |
149 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| | |||| ||||| |||||| | ||||| |||||||||||||| ||||||||||| ||| |
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| T |
28135588 |
tcaaaagattggaccagctgcaagaatatcttctgtcaatttgttgtcacc---tccaatcgtatagttagtgaaggtttcaaagttcttcttgaataat |
28135684 |
T |
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| Q |
150 |
ccacccagcttcaacaatgtcgcattgtaggcgtttttgtctgaccactgcaat |
203 |
Q |
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||| ||| |||||| | |||| || ||| ||||| |||||||||||||||||| |
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| T |
28135685 |
ccagccaacttcaatagtgtctcaaagtatgcgttcttgtctgaccactgcaat |
28135738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 473
Target Start/End: Original strand, 28135972 - 28136129
Alignment:
| Q |
316 |
agaatttctgaagggacaccctccacttcagttggggtctgaaggccaaaaatctcactcttcttgtattctgcccccaggaggcttccattgtgaatag |
415 |
Q |
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||||||||||| ||||| || ||||||||||| ||| ||| ||| || ||||||||| |||||||||| | | || ||||||||| ||||||| |
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| T |
28135972 |
agaatttctgaggggactccttccacttcagtagggatctcaagcccgaaaatctcagtcttcttgtactgaacattcaagaggcttcctgaatgaatag |
28136071 |
T |
|
| Q |
416 |
catcaattatttttctagtataacttagtttgatacgattcccggtaccatagctgca |
473 |
Q |
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||||||| |||||||| ||||| | ||||| || ||||| ||| ||||||||||||| |
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| T |
28136072 |
catcaataatttttcttgtatagccaagtttaatgcgatttccgctaccatagctgca |
28136129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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