View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-7 (Length: 680)
Name: NF0737D-Insertion-7
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 8 - 631
Target Start/End: Original strand, 33108910 - 33109526
Alignment:
| Q |
8 |
aacataagtcatgtgacattgaaataatattgtattgagttgaggacatgttaatttggtttcctgtatcaattatgtgaannnnnnnaatttggcatgt |
107 |
Q |
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| T |
33108910 |
aacataagtcatgtgatattgaaataatattgtattgagttgaggacatgttaatttggtttattgtatcaattctgtgaatttttttaatttggcatgt |
33109009 |
T |
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| Q |
108 |
tatggaggatggaaaaagaaaaggggtgcgcatttttctaatttaggagttaggtacattaaaatcacctttgggtttgnnnnnnnagggtttcgaaaat |
207 |
Q |
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| T |
33109010 |
tatggaggatggaaaa-gaaaaggggtgtgcatttttctaatttaggagttaggtacattaaaatcacctttaagtttgtttttttagggcttcaaaaat |
33109108 |
T |
|
| Q |
208 |
ggtagggagaaagagaga--------gtttgttgagcaaaagatgagttttctttcgtataaggaccctaaaatagaaggtttatattaattttttattg |
299 |
Q |
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| T |
33109109 |
ggtagggtgagagagagacggagagagtttgttgagcaaaagatgggcttcctttcatatagggaccccaaaatagagggtttatattaaatttttattg |
33109208 |
T |
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| Q |
300 |
agcttttcacttcgattaaaagtatatacatataaaacaaccttatttgaattgaatcacatgtaaccttatttgttgttaaaattttgtccttaacaat |
399 |
Q |
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| T |
33109209 |
agcttttcacttcgatgaaaagtatatacatataaaacaaccttatttgaattaaatcacatgtaaccttatttgt--------------ccttaacaat |
33109294 |
T |
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| Q |
400 |
cataaattattttttaagtttcttt-ataagaaattttgtaattcatttgaaatcaacacatgtatgtcatttttccttctctttcaaccacgtcgcttt |
498 |
Q |
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| T |
33109295 |
cataaattattttttaagttttttttataagaaattttgtaattcgtttgaaatcaacacatgtatgtcattttcccttctctttcaaccatgtcgcttt |
33109394 |
T |
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| Q |
499 |
caaaagtaaagacaattggaaatcatgtcaaaacaaacgctaggcttcaaagttgaatgatccattttttaatgtaatgaatgaacgatccattatacac |
598 |
Q |
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| T |
33109395 |
caaaagtaa-gacaattagaaatcatgtcaaaacaaacgctaggcttcaaagttgaatgatccattttttaatgtaatgaatgaatgatccattatacac |
33109493 |
T |
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| Q |
599 |
atgcacaaccaaagatatatactctttttatta |
631 |
Q |
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| T |
33109494 |
atgcactgccaaagatatatactctttttatta |
33109526 |
T |
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