View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0737D-Insertion-8 (Length: 824)

Name: NF0737D-Insertion-8
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0737D-Insertion-8
NF0737D-Insertion-8
[»] chr8 (2 HSPs)
chr8 (8-808)||(30114452-30115234)
chr8 (379-423)||(5311393-5311437)
[»] chr2 (3 HSPs)
chr2 (391-431)||(1220800-1220840)
chr2 (383-423)||(32516205-32516245)
chr2 (383-430)||(33775510-33775557)
[»] chr6 (1 HSPs)
chr6 (378-441)||(674116-674179)
[»] chr5 (5 HSPs)
chr5 (382-421)||(6604396-6604435)
chr5 (393-430)||(14958924-14958962)
chr5 (393-423)||(38826060-38826090)
chr5 (380-421)||(13654576-13654617)
chr5 (378-443)||(35463962-35464027)
[»] chr3 (2 HSPs)
chr3 (379-430)||(52417708-52417759)
chr3 (383-420)||(29290853-29290890)
[»] scaffold0777 (1 HSPs)
scaffold0777 (391-421)||(4743-4773)
[»] chr7 (2 HSPs)
chr7 (393-443)||(2635678-2635728)
chr7 (393-422)||(24283094-24283123)
[»] chr4 (1 HSPs)
chr4 (384-430)||(33113290-33113336)
[»] chr1 (5 HSPs)
chr1 (383-421)||(10332068-10332106)
chr1 (378-423)||(1226727-1226771)
chr1 (382-423)||(6793627-6793668)
chr1 (385-442)||(28358999-28359056)
chr1 (402-439)||(45645389-45645426)


Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 8 - 808
Target Start/End: Original strand, 30114452 - 30115234
Alignment:
Q  8 attaattcatgatgcctcacctcaagaataatgttacatcaaactgacgccactacattacaagtttacataaatataaaatgccaacaacctat-aaac 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30114452 attaattcatgatgcctcacctcaagaataatgttacatcaaactgacgccactacattacaagtttacataaatataaaatgccaacaacctataaaac 30114551  T
Q  107 ttgaatctgattcaaataaaacaatcctttgattcccgacaaaaatctttctacgatttttatatgataacatggtatttgcatgagcataaataccgca 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||| ||||||||||    
T  30114552 ttgaatctgattcaaataaaacaatcctttgattcccgacaaaaatctttccacgatttttatatgataaaatggtattttcatgagcacaaataccgca 30114651  T
Q  207 ttaatttaatcttttcgatgttaaaataatttcaaattatattgatgattggttatgagtggtttttaaaccctctctattgcttaacagtatacttcct 306  Q
    ||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       
T  30114652 ttaa--taatcttttcgatgttaaaataatttcaatttatattgatgattggttatgagtggtttttaaaccctctctattgtttaacagtatactt--- 30114746  T
Q  307 ccctccgttcacatttgtaaataaaaaacaatttcttaaatttatcgaatatctaaattctaatgtatatgatatatatagactaaatacattagttatt 406  Q
       |||||||||||||||||||||||||||||||||||| |||||||||||       ||||||| ||||||||||||||||| ||||||||||||||||    
T  30114747 ---tccgttcacatttgtaaataaaaaacaatttcttaagtttatcgaata-------tctaatgcatatgatatatatagaccaaatacattagttatt 30114836  T
Q  407 caatgaatttaaaaaatgttttttcccttataaatatccgaaaggagtaaggtgctattgttttatggtaggtcgagtactcattatatttttatctgct 506  Q
    ||||||||||||||||| ||||||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||    
T  30114837 caatgaatttaaaaaatatttttt-gcttataaatatccgaaaggagtaaggtgctattgttttatggtatgtcgagtactcattatacttttctctgct 30114935  T
Q  507 tgttaggtcaagtagtattttaacttctctcattctattcaataaaatatattttgcggttnnnnnnncaaccgatgaatgtttgaaagagatggtgcta 606  Q
    |||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||       ||||||||||||||||||||||||||||||||    
T  30114936 tgttaggtcaagtagtattttaacttctctcattctattcaataa---atattttgtggttaaaaaaacaaccgatgaatgtttgaaagagatggtgcta 30115032  T
Q  607 tcgnnnnnnnnnnnnnnggtttcacacattgagataatactatcaatagttgcgaggttnnnnnnnnnnnntatgttattgacaccaaatttatcttaca 706  Q
    |||              ||||||||||||||||||||||||||||||||||||||||||            | | ||| |||||||||||||||||||||    
T  30115033 tcgtttttattttttttggtttcacacattgagataatactatcaatagttgcgaggttaaaaataaaaaatgttttaatgacaccaaatttatcttaca 30115132  T
Q  707 catgcaacacttcgttagtcacatacaaattgtggttaatttagttgaatatatgattaattcgtattatgttaaaagttgtgtaattgtggttaatcat 806  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||||||    
T  30115133 catgcaacacttcgttagtcacatacaaattgtggttaatttagttaaatatatgattaatttatattattttaaaagttgtgtaattgtggttaatcat 30115232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 379 - 423
Target Start/End: Original strand, 5311393 - 5311437
Alignment:
Q  379 tatatatagactaaatacattagttattcaatgaatttaaaaaat 423  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||||    
T  5311393 tatatatagattaaatacattaattattcaatgaatctaaaaaat 5311437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 391 - 431
Target Start/End: Complemental strand, 1220840 - 1220800
Alignment:
Q  391 aaatacattagttattcaatgaatttaaaaaatgttttttc 431  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  1220840 aaatacattagttattcaatgaatctacaaaatgttttttc 1220800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 383 - 423
Target Start/End: Original strand, 32516205 - 32516245
Alignment:
Q  383 tatagactaaatacattagttattcaatgaatttaaaaaat 423  Q
    ||||||| |||||||||| ||||||||||||||||||||||    
T  32516205 tatagaccaaatacattaattattcaatgaatttaaaaaat 32516245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 430
Target Start/End: Complemental strand, 33775557 - 33775510
Alignment:
Q  383 tatagactaaatacattagttattcaatgaatttaaaaaatgtttttt 430  Q
    ||||||||| |||||| |||||||||||||| | ||||||||||||||    
T  33775557 tatagactatatacatcagttattcaatgaactaaaaaaatgtttttt 33775510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 441
Target Start/End: Original strand, 674116 - 674179
Alignment:
Q  378 atatatatagactaaatacattagttattcaatgaatttaaaaaatgttttttcccttataaat 441  Q
    |||| ||||||| ||||| |||||||||||||||||| ||||||||  |||||  |||||||||    
T  674116 atatttatagaccaaatatattagttattcaatgaatctaaaaaattgttttttgcttataaat 674179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 382 - 421
Target Start/End: Original strand, 6604396 - 6604435
Alignment:
Q  382 atatagactaaatacattagttattcaatgaatttaaaaa 421  Q
    |||||||||||||| |||| ||||||||||||||||||||    
T  6604396 atatagactaaataaattaattattcaatgaatttaaaaa 6604435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 430
Target Start/End: Original strand, 14958924 - 14958962
Alignment:
Q  393 atacattagttattcaatgaatttaaaaa-atgtttttt 430  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  14958924 atacattagttattcaatgaatttaaaaagatgtttttt 14958962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 423
Target Start/End: Complemental strand, 38826090 - 38826060
Alignment:
Q  393 atacattagttattcaatgaatttaaaaaat 423  Q
    |||||||||||||||||||||||||||||||    
T  38826090 atacattagttattcaatgaatttaaaaaat 38826060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 13654576 - 13654617
Alignment:
Q  380 atatatagactaaatacattagttattcaatgaatttaaaaa 421  Q
    ||||||||||||||||||| | ||||| ||||||||||||||    
T  13654576 atatatagactaaatacatcatttattgaatgaatttaaaaa 13654617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 443
Target Start/End: Complemental strand, 35464027 - 35463962
Alignment:
Q  378 atatatatagactaaatacattagttattcaatgaatttaaaaaatgttttttcccttataaatat 443  Q
    ||||||||||||   |||||||||||||||||||||  ||||||||  |||||  |||||||||||    
T  35464027 atatatatagaccggatacattagttattcaatgaacctaaaaaattattttttgcttataaatat 35463962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 379 - 430
Target Start/End: Complemental strand, 52417759 - 52417708
Alignment:
Q  379 tatatatagactaaatacattagttattcaatgaatttaaaaaatgtttttt 430  Q
    |||||||| |||||||||||||||||||| ||||| ||||||| | ||||||    
T  52417759 tatatataaactaaatacattagttattcgatgaacttaaaaattatttttt 52417708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 29290853 - 29290890
Alignment:
Q  383 tatagactaaatacattagttattcaatgaatttaaaa 420  Q
    |||||||||||||||| |||||||||||||||| ||||    
T  29290853 tatagactaaatacataagttattcaatgaattaaaaa 29290890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 421
Target Start/End: Complemental strand, 4773 - 4743
Alignment:
Q  391 aaatacattagttattcaatgaatttaaaaa 421  Q
    |||||||||||||||||||||||||||||||    
T  4773 aaatacattagttattcaatgaatttaaaaa 4743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 2635678 - 2635728
Alignment:
Q  393 atacattagttattcaatgaatttaaaaaatgttttttcccttataaatat 443  Q
    ||||||||||||||||||| |||||||||||  |||||  |||||||||||    
T  2635678 atacattagttattcaatgtatttaaaaaattgttttttacttataaatat 2635728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 422
Target Start/End: Complemental strand, 24283123 - 24283094
Alignment:
Q  393 atacattagttattcaatgaatttaaaaaa 422  Q
    ||||||||||||||||||||||||||||||    
T  24283123 atacattagttattcaatgaatttaaaaaa 24283094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 384 - 430
Target Start/End: Original strand, 33113290 - 33113336
Alignment:
Q  384 atagactaaatacattagttattcaatgaatttaaaaaatgtttttt 430  Q
    |||||| |||||||||||||||| |||||||||||||| || |||||    
T  33113290 atagaccaaatacattagttatttaatgaatttaaaaattgattttt 33113336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 10332106 - 10332068
Alignment:
Q  383 tatagactaaatacattagttattcaatgaatttaaaaa 421  Q
    ||||| |||||||||||||||||||| ||||||||||||    
T  10332106 tatagtctaaatacattagttattcattgaatttaaaaa 10332068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 378 - 423
Target Start/End: Original strand, 1226727 - 1226771
Alignment:
Q  378 atatatatagactaaatacattagttattcaatgaatttaaaaaat 423  Q
    |||| ||||||| ||||||||||||||||||||||| |||||||||    
T  1226727 atatttatagac-aaatacattagttattcaatgaacttaaaaaat 1226771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 6793668 - 6793627
Alignment:
Q  382 atatagactaaatacattagttattcaatgaatttaaaaaat 423  Q
    ||||| ||||| ||||||| ||||||||||||||||||||||    
T  6793668 atatatactaagtacattaattattcaatgaatttaaaaaat 6793627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 442
Target Start/End: Original strand, 28358999 - 28359056
Alignment:
Q  385 tagactaaatacattagttattcaatgaatttaaaaaatgttttttcccttataaata 442  Q
    ||||| |||||||||| |||||||||||||||||||| |  |||||  ||||||||||    
T  28358999 tagaccaaatacattaattattcaatgaatttaaaaattcatttttttcttataaata 28359056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 45645389 - 45645426
Alignment:
Q  402 ttattcaatgaatttaaaaaatgttttttcccttataa 439  Q
    ||||||||||||||||||||||| |||||| |||||||    
T  45645389 ttattcaatgaatttaaaaaatgatttttcacttataa 45645426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3179 times since January 2019
Visitors: 4805