View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737D-Insertion-9 (Length: 913)
Name: NF0737D-Insertion-9
Description: NF0737D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737D-Insertion-9 |
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Alignment Details
Target: chr7 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 8 - 404
Target Start/End: Original strand, 2865288 - 2865684
Alignment:
| Q |
8 |
catttttcacttggttaattaaaagaactcggttgagtggaagtaacttgtattataaggaaaagaatttagagaacaagaggtacatttagacatagat |
107 |
Q |
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| T |
2865288 |
catttttcacttggttaattaaaagaactcggttgagtggaagtaacttgtattataaggaaaagaatttagagaacaagaggtacaattagacataggt |
2865387 |
T |
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| Q |
108 |
ataaggataccctaataaaattccaaataaaattgaataatgttaggttcaagagaaaacaaataaaatgaatcactaagagtgtgtcccctacactttt |
207 |
Q |
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| T |
2865388 |
ataaggataccctaataaaattccaaataaaattgaataatgttaggttcaagagaaaacaaataaaatgaatcactaagagtgtgtcccctacactttt |
2865487 |
T |
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| Q |
208 |
aggtttgcaagtgaagttaggcacctcttttttatcacacaattaaagcatgaccttttacattcattaaccaataattaaagtacaaggttacattcaa |
307 |
Q |
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| T |
2865488 |
aggtttgcaagtgaagttaggcacctcttttttatcacacaattaaagcatgaccttttacattcattaaccaataattaaagtacaaggttacattcaa |
2865587 |
T |
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| Q |
308 |
caatctctttaacattaatctttctcaacatggcaagtttctcatttgctgaggcatagcataaataaagccagcacatcatctacaaatgcttgcc |
404 |
Q |
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| T |
2865588 |
caatctctttaacattaatctttctcaacatggcaagtttctcatttgctgaggcatagcataaataaagccagcacatcatctacaaatgcttgcc |
2865684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 474 - 913
Target Start/End: Original strand, 2865752 - 2866194
Alignment:
| Q |
474 |
gggctaaaccatcttctaaatagcccaacactaataaatccatttacactactcaatttaaactt-gtgcttttaattttttaaatgaaaacttgagaat |
572 |
Q |
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| T |
2865752 |
gggctaaaccatcttctaagtagcccaacactaataaatccatttacactactcaatttaaacttagtgcttttaattttttaaatgaaaacttgagaat |
2865851 |
T |
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| Q |
573 |
caatatactattattagctattactaaacattgttgaaaaatatttaattaaaagcaacatttgaaaaaccaaatcggaaacaaaccagcgaaacttcca |
672 |
Q |
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| T |
2865852 |
caagatactattattagctattactaaacattgttgaaaaatatttaattaaaagcaacattttaaaaaccgaatcggaaacaaaccagcaaaacttcca |
2865951 |
T |
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| Q |
673 |
agtcgtggttcaacaactttaaaccgttcgaaacatgatgaaaccataatcgaacggtttaaataatcaaatcttcnacattgttagtttgcggttcaac |
772 |
Q |
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| T |
2865952 |
agtcgtggttcaacaactttaaaccgttcgaaacaggacgaaaccatagtttaacgattaaaataatcaaatcttcgacaatgttagtttgcggttcaac |
2866051 |
T |
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| Q |
773 |
tggttaaaccgttcgattcggttttaaaaacattgattaaaatgttgcttaatagttgaactgccttccagtgtaggtctgaccaaa-gaccaaccagca |
871 |
Q |
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| T |
2866052 |
cggttaaaccgttcgattcggttttaaaaacattgattaaaatgttgcttaatagttgaactgccttccagtgtaggtctgaccaaaggaccaaccagca |
2866151 |
T |
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| Q |
872 |
-gagcagcattgaatgaaaccacactgtgaccattacttgtgg |
913 |
Q |
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| T |
2866152 |
ggagcagcattgaatgaaaccacactgtgaccattacttgtgg |
2866194 |
T |
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