View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737_high_10 (Length: 303)
Name: NF0737_high_10
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 30 - 293
Target Start/End: Original strand, 50766277 - 50766540
Alignment:
| Q |
30 |
aagaacccgtatattttccttcctttgtctctggtgttgcacagttgtatcctcctgtgactccataattgcaattcttttaatcatttgttcacatttg |
129 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766277 |
aagaacccatatattttccttcctttgtctctggtgttgcacagttgtatcctcctgtgactccataattgcaattcttttaatcatttgttcacatttg |
50766376 |
T |
|
| Q |
130 |
aagttcacataaattttattaaaaccttcaaagccaaaattcgagtcatcttatacattctcatgtgtatatttaactattcattctttaacgccaattg |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766377 |
aagttcacataaattttattaaaaccttcaaagccaaaattcgagtcatcttatacattctcatgtgtatatttaactattcattctttaacgccaattg |
50766476 |
T |
|
| Q |
230 |
gattgattttattcaatctcctcattattcccatcgtgattatctctctctttctctagaatta |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50766477 |
gattgattttattcaatctcctcattattcccatcgtgattatctctctctttctctagaatta |
50766540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 29996542 - 29996450
Alignment:
| Q |
154 |
ccttcaaagccaaaattcgagtcatcttatacattctcatgtgtatatttaactattcattctttaacgccaattggattgattttattcaat |
246 |
Q |
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|||||||| ||||||| ||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
29996542 |
ccttcaaaatcaaaattggagtcatcttagacattctcatgtgtgtatttaattattcattctttaacaccaattggattgattttattcaat |
29996450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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