View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0737_high_14 (Length: 251)

Name: NF0737_high_14
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0737_high_14
NF0737_high_14
[»] chr1 (3 HSPs)
chr1 (16-189)||(52278022-52278194)
chr1 (144-251)||(16146914-16147022)
chr1 (17-69)||(7857286-7857338)
[»] chr4 (2 HSPs)
chr4 (151-241)||(19672555-19672645)
chr4 (16-58)||(19672749-19672791)
[»] chr7 (4 HSPs)
chr7 (140-251)||(3477793-3477904)
chr7 (10-101)||(3477956-3478047)
chr7 (16-66)||(6584700-6584750)
chr7 (150-190)||(6584511-6584551)
[»] chr6 (1 HSPs)
chr6 (161-224)||(15133069-15133132)
[»] chr2 (3 HSPs)
chr2 (163-251)||(7873668-7873755)
chr2 (16-101)||(17105016-17105100)
chr2 (16-57)||(37771036-37771078)
[»] chr8 (1 HSPs)
chr8 (16-88)||(15821772-15821844)
[»] chr5 (2 HSPs)
chr5 (144-240)||(29086935-29087031)
chr5 (19-68)||(26046360-26046409)
[»] scaffold0063 (1 HSPs)
scaffold0063 (164-251)||(57510-57596)
[»] chr3 (2 HSPs)
chr3 (16-57)||(37123037-37123079)
chr3 (16-69)||(4464330-4464383)
[»] scaffold0050 (1 HSPs)
scaffold0050 (27-69)||(36337-36379)


Alignment Details
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 52278194 - 52278022
Alignment:
Q  16 atcaccctaacaaacacctgcctcctcacctaaacaacaccagctacccccttaattagctcatgtccgcaaaatcgttctgacacnnnnnnncgagtcc 115  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||  ||||||||||       |||||||    
T  52278194 atcaccccaacaaacacctgcctcctcacctaaacaacactagctacccctttaattagctcctgtccgcaaaactgttctgacacagaaaa-cgagtcc 52278096  T
Q  116 taaaaaagccacggccagtcatccaacagacatccagtgaccccggagggggtctgccaccaaaacaagctaaa 189  Q
     |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  52278095 caaaaaagccacgaccagtcatccaacagacatccagtgaccccagagggggtctgccaccaaaacaagctaaa 52278022  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 251
Target Start/End: Complemental strand, 16147022 - 16146914
Alignment:
Q  144 gacatccagtgaccccggag-ggggtctgccaccaaaacaagctaaatctaaagctaaacggccaccatcgcgaaacaccacaaccaccacgatccttac 242  Q
    ||||| |||||||||||||| |||||||||||||||| ||||| ||||||||||||| | |||||||    ||||  || |||||||||||||||||||     
T  16147022 gacatacagtgaccccggagaggggtctgccaccaaatcaagcaaaatctaaagctacatggccaccggtacgaataacgacaaccaccacgatccttat 16146923  T
Q  243 aacgacaaa 251  Q
     ||||||||    
T  16146922 gacgacaaa 16146914  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 7857338 - 7857286
Alignment:
Q  17 tcaccctaacaaacacctgcctcctcacctaaacaacaccagctaccccctta 69  Q
    |||||| |||||| |||| |||||||||||||| ||||||||| |||| ||||    
T  7857338 tcaccccaacaaataccttcctcctcacctaaaaaacaccagccaccctctta 7857286  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 151 - 241
Target Start/End: Complemental strand, 19672645 - 19672555
Alignment:
Q  151 agtgaccccggagggggtctgccaccaaaacaagctaaatctaaagctaaacggccaccatcgcgaaacaccacaaccaccacgatcctta 241  Q
    ||||||||||||||||||||||||||||| ||||  || | | |||||| | | |||||| ||||||||||||||||||||||||||||||    
T  19672645 agtgaccccggagggggtctgccaccaaatcaagaaaagtttgaagctacaagaccaccaacgcgaaacaccacaaccaccacgatcctta 19672555  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 58
Target Start/End: Complemental strand, 19672791 - 19672749
Alignment:
Q  16 atcaccctaacaaacacctgcctcctcacctaaacaacaccag 58  Q
    ||||||| |||||||||| ||||||||||||||||||||||||    
T  19672791 atcacccaaacaaacacccgcctcctcacctaaacaacaccag 19672749  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 140 - 251
Target Start/End: Complemental strand, 3477904 - 3477793
Alignment:
Q  140 aacagacatccagtgaccccggagggggtctgccaccaaaacaagctaaatctaaagctaaacggccaccatcgcgaaacaccacaaccaccacgatcct 239  Q
    |||||||||  ||||||| | |||||| |||| ||  ||||||||  |||||| |||||| |||||||||| |||||||||||| |||||||||||||||    
T  3477904 aacagacatatagtgacctcagaggggctctgtcaagaaaacaagaaaaatctgaagctatacggccaccagcgcgaaacaccataaccaccacgatcct 3477805  T
Q  240 tacaacgacaaa 251  Q
    ||| | ||||||    
T  3477804 tacgatgacaaa 3477793  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 3478047 - 3477956
Alignment:
Q  10 aataatatcaccctaacaaacacctgcctcctcacctaaacaacaccagctacccccttaattagctcatgtccgcaaaatcgttctgacac 101  Q
    ||||| ||||||| || |||||||  || ||||||||||||||||||||| ||||| |||| ||||||  ||| |||||| ||||| |||||    
T  3478047 aataaaatcaccccaaaaaacaccccccacctcacctaaacaacaccagccaccccattaaatagctcccgtctgcaaaaccgttccgacac 3477956  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 6584750 - 6584700
Alignment:
Q  16 atcaccctaacaaacacctgcctcctcacctaaacaacaccagctaccccc 66  Q
    ||||||| |||||||||||||||||||||||||| ||||||| | ||||||    
T  6584750 atcaccccaacaaacacctgcctcctcacctaaataacaccaaccaccccc 6584700  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 6584551 - 6584511
Alignment:
Q  150 cagtgaccccggagggggtctgccaccaaaacaagctaaat 190  Q
    ||||||||||||||||||||| |||||||| ||||| ||||    
T  6584551 cagtgaccccggagggggtcttccaccaaatcaagcaaaat 6584511  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Original strand, 15133069 - 15133132
Alignment:
Q  161 gagggggtctgccaccaaaacaagctaaatctaaagctaaacggccaccatcgcgaaacaccac 224  Q
    ||||||||||||||||||||||||  |||||| ||||||||||||||| | |||||||||||||    
T  15133069 gagggggtctgccaccaaaacaagaaaaatctgaagctaaacggccactagcgcgaaacaccac 15133132  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 251
Target Start/End: Complemental strand, 7873755 - 7873668
Alignment:
Q  163 gggggtctgccaccaaaacaagctaaatctaaagctaaacggccaccatcgcgaaacaccacaaccaccacgatccttacaacgacaaa 251  Q
    ||||||||||||||||||||||| |||||||||||   |||||||||  || |||  ||||||||||||||||||||||  ||||||||    
T  7873755 gggggtctgccaccaaaacaagcaaaatctaaagcaccacggccacc-gcgtgaacaaccacaaccaccacgatccttatgacgacaaa 7873668  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 17105100 - 17105016
Alignment:
Q  16 atcaccctaacaaacacctgcctcctcacctaaacaacaccagctacccccttaattagctcatgtccgcaaaatcgttctgacac 101  Q
    ||||||| |||||||||  |||||||||||||||||||||| || |||||||||  | ||||  |||||| |||||||||||||||    
T  17105100 atcaccccaacaaacacacgcctcctcacctaaacaacacccgccacccccttaggtggctcccgtccgc-aaatcgttctgacac 17105016  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 37771036 - 37771078
Alignment:
Q  16 atcaccct-aacaaacacctgcctcctcacctaaacaacacca 57  Q
    |||||||| |||||||||| |||||||||||||||||||||||    
T  37771036 atcaccctcaacaaacacccgcctcctcacctaaacaacacca 37771078  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 15821772 - 15821844
Alignment:
Q  16 atcaccctaacaaacacctgcctcctcacctaaacaacaccagctacccccttaattagctcatgtccgcaaa 88  Q
    ||||||| |||||||||| |||||||||||||||||||| |||| || ||||||  ||||||  |||||||||    
T  15821772 atcaccccaacaaacacccgcctcctcacctaaacaacatcagccactcccttatatagctcccgtccgcaaa 15821844  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 29087031 - 29086935
Alignment:
Q  144 gacatccagtgaccccggagggggtctgccaccaaaacaagctaaatctaaagctaaacggccaccatcgcgaaacaccacaaccaccacgatcctt 240  Q
    |||| ||||||| || ||| ||||| |||||||||| ||||| |||||| |||||| |||||||||   |||||  |||| ||||||||||||||||    
T  29087031 gacacccagtgatcctggacggggtatgccaccaaatcaagcaaaatctgaagctacacggccaccgatgcgaacaaccataaccaccacgatcctt 29086935  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 26046360 - 26046409
Alignment:
Q  19 accctaacaaacacctgcctcctcacctaaacaacaccagctaccccctt 68  Q
    |||| |||||||||| |||| |||||||||||||||||||| ||||||||    
T  26046360 accccaacaaacacccgcctactcacctaaacaacaccagccaccccctt 26046409  T

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Target: scaffold0063 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 164 - 251
Target Start/End: Complemental strand, 57596 - 57510
Alignment:
Q  164 ggggtctgccaccaaaacaagctaaatctaaagctaaacggccaccatcgcgaaacaccacaaccaccacgatccttacaacgacaaa 251  Q
    ||||| |||||||||| ||||| |||||  ||||   |||||||||| ||||||  ||||||||||||||||||||||| ||||||||    
T  57596 ggggtgtgccaccaaa-caagcaaaatccgaagcaccacggccaccagcgcgaacaaccacaaccaccacgatccttacgacgacaaa 57510  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 37123079 - 37123037
Alignment:
Q  16 atcaccct-aacaaacacctgcctcctcacctaaacaacacca 57  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  37123079 atcaccctcaacaaacacctgcctcctcacctaaacaacacca 37123037  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 4464330 - 4464383
Alignment:
Q  16 atcaccctaacaaacacctgcctcctcacctaaacaacaccagctaccccctta 69  Q
    ||||||| | |||||||| |||| |||||||||||||||||||| |||| ||||    
T  4464330 atcaccccatcaaacacccgcctactcacctaaacaacaccagccaccctctta 4464383  T

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Target: scaffold0050 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 36379 - 36337
Alignment:
Q  27 aaacacctgcctcctcacctaaacaacaccagctaccccctta 69  Q
    |||||||||||||||||||||||||| |||| | |||||||||    
T  36379 aaacacctgcctcctcacctaaacaaaaccaaccaccccctta 36337  T

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