View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0737_high_16 (Length: 243)
Name: NF0737_high_16
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_high_16 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 13068264 - 13068034
Alignment:
| Q |
1 |
ctatgagtgttattcatatgtcatatgtgctagtctttacattttcatgtcctcattctagtatataaataaattatatcactatatccttcatttttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13068264 |
ctatgagtgttattcatatgtcatatgtactagtctttacattttcatgtcctcattctagtatataaataaattatatcactatatccttcatttttct |
13068165 |
T |
|
| Q |
101 |
ttaactctctcttattacgaacaatttgttaatagcataaagacctcgaacattttcctatatcaaagatcataataaaactataaagttcctatttaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13068164 |
ttaactctctcttattacgaacaatttgctaatagcataaggacctcgaacattttgctatatcaaagatcataataaaactctaaagttcctatttaag |
13068065 |
T |
|
| Q |
201 |
aaagagtgtccttcaaccgaacaagtacctt |
231 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
13068064 |
aaaaagtgtccttcaaccgaacaagtacctt |
13068034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 12993615 - 12993383
Alignment:
| Q |
1 |
ctatgagtgttattcatatgtcatatgtgctagtctttacattttcatgtcctcattctagtatataaataaattatatcactatatccttcatttttct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12993615 |
ctatgagtgttattcatatgtcatatgtactagtctttacattttcatgtcctcattctagtatataaataaattatatcactatatccttcatttttct |
12993516 |
T |
|
| Q |
101 |
ttaactctctct--tattacgaacaatttgttaatagcataaagacctcgaacattttcctatatcaaagatcataataaaactataaagttcctattta |
198 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
12993515 |
ttaactctctctcttattacgaacaatttgctaatagcataaggacctcgaacattttgctatatcaaagatcataataaaactctaaagttcctattta |
12993416 |
T |
|
| Q |
199 |
agaaagagtgtccttcaaccgaacaagtacctt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12993415 |
agaaagagtgtccttcaaccgaacaagtacctt |
12993383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5360 times since January 2019
Visitors: 4850