View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737_high_4 (Length: 687)
Name: NF0737_high_4
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 535; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 658
Target Start/End: Original strand, 54219125 - 54219779
Alignment:
| Q |
15 |
tccaacaatatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatct |
114 |
Q |
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| T |
54219125 |
tccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgcaatct |
54219224 |
T |
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| Q |
115 |
ccctgaacaagaaccaatatacaagtcaat----gtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatataaga |
210 |
Q |
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| T |
54219225 |
ccctgaacaagaaccaatatacaagtcaattaatgtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatataaga |
54219324 |
T |
|
| Q |
211 |
tataccttggaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaactaacataacaataccccaaattaaaatcat |
310 |
Q |
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| T |
54219325 |
tataccttggaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaactaacataaaaataccccaaa-----atcat |
54219419 |
T |
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| Q |
311 |
gtcaagtttcgtcaaattgttgaatgaaggcaaaagatgaccacaatttcttggataagaaaaacgctggttaaggaaacaaaaatagattcattattgt |
410 |
Q |
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| T |
54219420 |
gtcaagtttcgtcaaattgttgaatgaaggcaaaagatgaccacaatttcttggataagaaaaacgctggttaaggaaacaaaaataaattcattattgt |
54219519 |
T |
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| Q |
411 |
gacatataaagaacatgcaatgaataaagaagcacataacggggagaacattgtcaatagtcattttcttatacaatat------------tnnnnnnnn |
498 |
Q |
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| T |
54219520 |
gacatataaagaacatgcaatgaataaagaagcacataacgggaagaacattgtcaatagtcattttcttatacaatatttaaaaaaaaaataaaaaaaa |
54219619 |
T |
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| Q |
499 |
ngatgataagtaaatattcaaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgcacaatga |
598 |
Q |
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| T |
54219620 |
agatgataagtaaatattcaaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgcacaatga |
54219719 |
T |
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| Q |
599 |
gaaacatgtagtggattttcaggataggaaaacttaagatcaatatatgcatcaactatg |
658 |
Q |
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| T |
54219720 |
gaaacatgtagtggattttcaggataggaaaacttaagatcaatatatgcatcaactatg |
54219779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 36 - 103
Target Start/End: Original strand, 31217546 - 31217613
Alignment:
| Q |
36 |
acataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaagg |
103 |
Q |
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| T |
31217546 |
acatgatttgagagaagatttgaaacagcaaggcagtgaatctgatgtccagtcttcactatccaagg |
31217613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 601
Target Start/End: Original strand, 31255550 - 31255632
Alignment:
| Q |
519 |
aacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgcacaatgagaa |
601 |
Q |
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| T |
31255550 |
aacatacctcaagagtatcattagctagtttgagagacttgacattgctaagtccactcagtagctcaattgcacactgagaa |
31255632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 31217729 - 31217790
Alignment:
| Q |
221 |
aaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaacta |
282 |
Q |
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| T |
31217729 |
aaatgtgaagaaattctagtttaggactctttcggagaatgtctgctaatacttcacaacta |
31217790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 562
Target Start/End: Original strand, 31239041 - 31239087
Alignment:
| Q |
516 |
tcaaacatacctcaatagtattatttgttagtttgagagacttgaca |
562 |
Q |
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| T |
31239041 |
tcaaacatacctcgagagtatcatttgctagtttgagagacttgaca |
31239087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 592
Target Start/End: Original strand, 14728597 - 14728671
Alignment:
| Q |
518 |
aaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgca |
592 |
Q |
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| T |
14728597 |
aaacatacctgaagagtatcatttgatattgtgagagatttgacactaccaagtcgactcaatagctcaattgca |
14728671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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