View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0737_high_6 (Length: 448)

Name: NF0737_high_6
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0737_high_6
NF0737_high_6
[»] chr5 (14 HSPs)
chr5 (59-374)||(10215590-10215905)
chr5 (15-162)||(10212170-10212317)
chr5 (189-363)||(13854744-13854918)
chr5 (264-372)||(10211852-10211960)
chr5 (1-129)||(10102861-10102991)
chr5 (1-152)||(10105945-10106097)
chr5 (1-95)||(13856073-13856167)
chr5 (1-88)||(10109358-10109445)
chr5 (1-96)||(10209685-10209780)
chr5 (182-233)||(10104247-10104298)
chr5 (182-233)||(10107727-10107778)
chr5 (279-329)||(10104351-10104401)
chr5 (15-88)||(9660199-9660272)
chr5 (15-95)||(9674059-9674140)
[»] chr8 (3 HSPs)
chr8 (1-88)||(31555089-31555176)
chr8 (1-88)||(31878293-31878380)
chr8 (1-71)||(31558191-31558261)
[»] chr1 (5 HSPs)
chr1 (19-79)||(45152068-45152128)
chr1 (1-48)||(10542449-10542496)
chr1 (1-72)||(42202365-42202436)
chr1 (1-72)||(42211233-42211304)
chr1 (19-72)||(2176292-2176345)
[»] chr7 (4 HSPs)
chr7 (1-88)||(3649532-3649619)
chr7 (1-88)||(3647083-3647170)
chr7 (16-55)||(3656176-3656215)
chr7 (1-88)||(3657649-3657736)
[»] chr4 (1 HSPs)
chr4 (1-46)||(25698865-25698910)
[»] chr3 (1 HSPs)
chr3 (24-54)||(46446294-46446324)


Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 59 - 374
Target Start/End: Complemental strand, 10215905 - 10215590
Alignment:
Q  59 tagggctctgcaattttagttcaatattttcctattcctatttttatgtggttactatgtttttggtatgctacttgtttaagggagttctttaccaatt 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||  ||||||||||||||||| ||    
T  10215905 tagggctctgcaattttagttcaatattttcctattcctatttttatgtggtaactatgtttctgatatgctacttgtgcaagggagttctttaccactt 10215806  T
Q  159 gtataatatgtttaagccgattaattagtcttgagatgattgcataacttcatagacatatgttgacttgatttactgataataatgattagttatatga 258  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  10215805 gtataatatgtttaagctgattaattagtcttgagatgattgcataacttcatagacctatgttgacttgatttattgataataatgattagttatatga 10215706  T
Q  259 taatcagtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatgttaacattggacatgacaaaatagggtat 358  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10215705 taatcagtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatgttaacaatggacatgacaaaatagggtat 10215606  T
Q  359 tctgctgtcgaaatat 374  Q
    ||||||||||||||||    
T  10215605 tctgctgtcgaaatat 10215590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 10212317 - 10212170
Alignment:
Q  15 acaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatattttcctattcctatttttatgtggttact 114  Q
    ||||||||||||||||||||||||||||||||||| || | ||  | ||||||||||||||||| |||||||||| ||||| | ||||| ||||||||||    
T  10212317 acaattagcggcatacgctagtttttggaagagtcctcctcaccgaaggctctgcaattttagtacaatattttcttattcttgtttttttgtggttact 10212218  T
Q  115 atgtttttggtatgctacttgtttaagggagttctttaccaattgtat 162  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  10212217 atgttattggtatgctacttgtttaagggagttctttaccacttgtat 10212170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 189 - 363
Target Start/End: Original strand, 13854744 - 13854918
Alignment:
Q  189 ttgagatgattgcataacttcatagacatatgttgacttgatttactgataataatgattagttatatgataatcagtaacattctggagatagtggttt 288  Q
    |||| ||||| ||||||||||||||||  ||| ||||||||||||  ||| | ||||||| ||||| |||||||||||||| ||| ||||||||| ||||    
T  13854744 ttgaaatgatagcataacttcatagaccaatgctgacttgatttatggatgacaatgatttgttatttgataatcagtaacgttccggagatagtagttt 13854843  T
Q  289 ctgcaatacaatgttactcttggcactagtcatttcgcatgttaacattggacatgacaaaatagggtattctgc 363  Q
     |||||| | |||||| |||| ||||||||||||||| ||||||||| ||| || ||||||| ||||||||||||    
T  13854844 ttgcaatgccatgttattcttagcactagtcatttcgtatgttaacaatggccaggacaaaagagggtattctgc 13854918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 264 - 372
Target Start/End: Complemental strand, 10211960 - 10211852
Alignment:
Q  264 agtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatgttaacattggacatgacaaaatagggtattctgc 363  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||  ||||||| |||| ||||||||||| ||| || ||||||| ||||||||||||    
T  10211960 agtaacattctggagatggtggtttctgcaataccattttactcttaacactagtaattttgcatgttaacaatggccaggacaaaagagggtattctgc 10211861  T
Q  364 tgtcgaaat 372  Q
    |||||||||    
T  10211860 tgtcgaaat 10211852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 10102861 - 10102991
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatattttcctattc--cta 98  Q
    ||||||||||| | |||||||||||||||| |||||||||||||||||| |||| |   |||||||||||| ||||||||||||||||  |||||   ||    
T  10102861 accgtgtgagcgtcacaattagcggcatacactagtttttggaagagtcctcttcattgagggctctgcaaatttagttcaatatttttgtattctttta 10102960  T
Q  99 tttttatgtggttactatgtttttggtatgc 129  Q
    ||||||||||||| ||||||| |||||||||    
T  10102961 tttttatgtggttgctatgttattggtatgc 10102991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 10105945 - 10106097
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatattttcctattcctatt 100  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||| ||||||   |||||||||||| ||||||||||| ||||  ||||| | ||    
T  10105945 accgtgtgagcgtcataattagcggcatacgctagtttttggaagagtcctctttattgagggctctgcaaatttagttcaatttttttgtattcttttt 10106044  T
Q  101 tttatgtggttactatgt-ttttggtatgctacttgtttaagggagttcttta 152  Q
    || |||| ||| ||||||  | |||||||||| |||||||||| |||| ||||    
T  10106045 ttaatgtagttgctatgtaatatggtatgctatttgtttaaggtagttattta 10106097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 13856073 - 13856167
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatattttcctattc 95  Q
    ||||||||||| || | ||||||||||||| ||||||||||| |||||| |||| ||| |||||| |||||||||||||||||||||||||||||    
T  13856073 accgtgtgagcgttgctattagcggcatacactagtttttgggagagtcctcttcacagagggctttgcaattttagttcaatattttcctattc 13856167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 10109358 - 10109445
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatatttt 88  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||   |||||||||||||||||||| ||| ||||    
T  10109358 accgtgtgagcgtcacaattagcggcatacgctagtttttggaagagtcctctttatggagggctctgcaattttagttaaatttttt 10109445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 10209780 - 10209685
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatattttcctattcc 96  Q
    ||||||||||| | ||||| || |||||||| ||||||||||||||||  ||||||   ||||||||||||||||||||||||  ||| |||||||    
T  10209780 accgtgtgagcgtcacaatgagtggcatacgttagtttttggaagagttctctttatggagggctctgcaattttagttcaatgattttctattcc 10209685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 10104247 - 10104298
Alignment:
Q  182 attagtcttgagatgattgcataacttcatagacatatgttgacttgattta 233  Q
    |||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  10104247 attagtcttgagatgattgcataatttcatagaccattgttgacttgattta 10104298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 233
Target Start/End: Original strand, 10107727 - 10107778
Alignment:
Q  182 attagtcttgagatgattgcataacttcatagacatatgttgacttgattta 233  Q
    |||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  10107727 attagtcttgagatgattgcataatttcatagaccattgttgacttgattta 10107778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 329
Target Start/End: Original strand, 10104351 - 10104401
Alignment:
Q  279 atagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatg 329  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||| |||||    
T  10104351 atagtagtttctgcaataccatgttactcttagcactagtcatttggcatg 10104401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 9660272 - 9660199
Alignment:
Q  15 acaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatatttt 88  Q
    ||||||||| ||||| || |||||||||||||||| | || |   || ||||||||||||||||||||||||||    
T  9660272 acaattagcagcatatgccagtttttggaagagtcctattcatggagtgctctgcaattttagttcaatatttt 9660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 9674140 - 9674059
Alignment:
Q  15 acaattagcggcatacgctagtttttgg-aagagtcttctttacatagggctctgcaattttagttcaatattttcctattc 95  Q
    |||||| |||||||| |||||||||||| ||||||| |||| |   ||||||||||||| ||||| |||| |||||| ||||    
T  9674140 acaatttgcggcatatgctagtttttggaaagagtcatcttcattgagggctctgcaatattagtacaatgttttcccattc 9674059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31555176 - 31555089
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatatttt 88  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||| ||| ||||    
T  31555176 accgtgtgagcgtcacaattagcggcatacgctagtttttggaagagtcttctttattgagggctctgcaatattagtttaatttttt 31555089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 31878293 - 31878380
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatatttt 88  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||| ||| ||||    
T  31878293 accgtgtgagcgtcacaattagcggcatacgctagtttttggaagagtcttctttattgagggctctgcaatattagtttaatttttt 31878380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31558261 - 31558191
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaa 71  Q
    ||||||||| | | ||||||||||||||||| |||||||| |||||||| ||| ||   ||||||||||||    
T  31558261 accgtgtgaacgtcacaattagcggcatacgttagtttttagaagagtcctctatattgagggctctgcaa 31558191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 45152068 - 45152128
Alignment:
Q  19 ttagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagtt 79  Q
    ||||||||||||||||||||||||||||||| |||||||  ||||||||||||| ||||||    
T  45152068 ttagcggcatacgctagtttttggaagagtcctctttacggagggctctgcaatattagtt 45152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10542449 - 10542496
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagt 48  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10542449 accgtgtgagcgttacaattagcggcatacgctagtttttggaagagt 10542496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42202436 - 42202365
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaat 72  Q
    ||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  42202436 accgtgtcagcgtcacatttagcggcatacgctagtttttggaagagtcttctttttggagggctctgcaat 42202365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 42211304 - 42211233
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaat 72  Q
    ||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||    |||||||||||||    
T  42211304 accgtgtcagcgtcacatttagcggcatacgctagtttttggaagagtcttctttttggagggctctgcaat 42211233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 2176345 - 2176292
Alignment:
Q  19 ttagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaat 72  Q
    ||||||||||||||||||||||||||||||||| || ||  ||| |||||||||    
T  2176345 ttagcggcatacgctagtttttggaagagtctttttaacggaggactctgcaat 2176292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3649532 - 3649619
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatatttt 88  Q
    ||||||| ||||| ||||||| ||||||| ||||||||||||||| ||| |||| |   ||||||||||||| |||||||||| ||||    
T  3649532 accgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgcaatattagttcaatttttt 3649619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3647083 - 3647170
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatatttt 88  Q
    ||||||| ||| | || ||||||||||||| |||||||||| ||| ||| ||||||   ||||||||||||| ||||| |||| ||||    
T  3647083 accgtgtcagcgtcactattagcggcatacactagtttttgaaagggtcctctttattgagggctctgcaatgttagtgcaatgtttt 3647170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 3656176 - 3656215
Alignment:
Q  16 caattagcggcatacgctagtttttggaagagtcttcttt 55  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  3656176 caattaggggcatacgctagtttttggaagagtcctcttt 3656215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 3657649 - 3657736
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaagagtcttctttacatagggctctgcaattttagttcaatatttt 88  Q
    ||||||| ||| | |||| ||||||||||| ||||||||||||||  || ||||||   ||| ||||||||| |||||||||| ||||    
T  3657649 accgtgtcagcgtcacaaatagcggcatacactagtttttggaaggatcatctttatcgaggactctgcaatattagttcaatttttt 3657736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25698865 - 25698910
Alignment:
Q  1 accgtgtgagcattacaattagcggcatacgctagtttttggaaga 46  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||    
T  25698865 accgtgtgagcgtcataattagcggcatacgctagtttttggaaga 25698910  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 54
Target Start/End: Original strand, 46446294 - 46446324
Alignment:
Q  24 ggcatacgctagtttttggaagagtcttctt 54  Q
    |||||||||||||||||||||||||||||||    
T  46446294 ggcatacgctagtttttggaagagtcttctt 46446324  T

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