View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0737_high_9 (Length: 316)

Name: NF0737_high_9
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0737_high_9
NF0737_high_9
[»] chr6 (2 HSPs)
chr6 (66-232)||(21874919-21875085)
chr6 (69-105)||(7638633-7638669)
[»] chr4 (4 HSPs)
chr4 (66-104)||(21646309-21646347)
chr4 (64-104)||(17905156-17905196)
chr4 (63-99)||(20726873-20726909)
chr4 (69-105)||(31254450-31254486)
[»] chr3 (1 HSPs)
chr3 (63-105)||(41915170-41915212)
[»] chr8 (3 HSPs)
chr8 (63-104)||(10614983-10615024)
chr8 (63-104)||(10615629-10615670)
chr8 (64-104)||(37868627-37868667)
[»] chr2 (1 HSPs)
chr2 (64-104)||(26778398-26778439)
[»] scaffold0041 (1 HSPs)
scaffold0041 (69-105)||(67490-67526)
[»] chr7 (2 HSPs)
chr7 (69-105)||(40898758-40898794)
chr7 (64-104)||(43790893-43790933)
[»] chr5 (2 HSPs)
chr5 (64-104)||(60087-60127)
chr5 (69-105)||(2985271-2985307)
[»] chr1 (4 HSPs)
chr1 (64-104)||(369635-369675)
chr1 (64-104)||(31004481-31004521)
chr1 (64-104)||(31181557-31181597)
chr1 (64-104)||(52907384-52907424)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 66 - 232
Target Start/End: Complemental strand, 21875085 - 21874919
Alignment:
Q  66 aacatgtgtttataaatgggggtaatcctcaccttacaaattattgctgtgacattgtgttaattccaaccaatttatatgattgtgttcataatgctag 165  Q
    |||||||||||||||||| ||| |||||||||||||||||  |||  ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21875085 aacatgtgtttataaatgagggcaatcctcaccttacaaaccattcttgtgagattgtgttaattccaaccaatttatatgattgtgttcataatgctag 21874986  T
Q  166 tgaattcaactctatacatctgatttattctaaaagacattaactctatgcaacggacggtcaataa 232  Q
    |||||||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||    
T  21874985 tgaattcaactctatacatcggatttattctaaaaaacaataactctatgcaacggacggtcaataa 21874919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 7638669 - 7638633
Alignment:
Q  69 atgtgtttataaatgggggtaatcctcaccttacaaa 105  Q
    |||||||||||| |||||| |||||||||||||||||    
T  7638669 atgtgtttataagtgggggcaatcctcaccttacaaa 7638633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 21646347 - 21646309
Alignment:
Q  66 aacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  21646347 aacatgtgtttataaatgggggcaatcctcaccttacaa 21646309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 17905156 - 17905196
Alignment:
Q  64 tgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    |||||||  |||||||| |||||||||||||||||||||||    
T  17905156 tgaacataagtttataagtgggggtaatcctcaccttacaa 17905196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 20726909 - 20726873
Alignment:
Q  63 atgaacatgtgtttataaatgggggtaatcctcacct 99  Q
    |||||||||||||||||| |||||| |||||||||||    
T  20726909 atgaacatgtgtttataagtgggggcaatcctcacct 20726873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 31254486 - 31254450
Alignment:
Q  69 atgtgtttataaatgggggtaatcctcaccttacaaa 105  Q
    |||||||||||| |||||| |||||||||||||||||    
T  31254486 atgtgtttataagtgggggcaatcctcaccttacaaa 31254450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 41915170 - 41915212
Alignment:
Q  63 atgaacatgtgtttataaatgggggtaatcctcaccttacaaa 105  Q
    |||||||||||||||||| |||||| ||||||||||| |||||    
T  41915170 atgaacatgtgtttataagtgggggcaatcctcacctcacaaa 41915212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Complemental strand, 10615024 - 10614983
Alignment:
Q  63 atgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    ||||||||||||||| |||||||||||||| |||||| ||||    
T  10615024 atgaacatgtgtttacaaatgggggtaatcttcacctcacaa 10614983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 10615629 - 10615670
Alignment:
Q  63 atgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  10615629 atgaacatgtgtttataagtgagggtaatcctctccttacaa 10615670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 37868667 - 37868627
Alignment:
Q  64 tgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    ||||||||||||||| |||||||| ||||||||||| ||||    
T  37868667 tgaacatgtgtttattaatgggggcaatcctcacctcacaa 37868627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 26778398 - 26778439
Alignment:
Q  64 tgaacatgtgtttataaatgg-gggtaatcctcaccttacaa 104  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  26778398 tgaaaatgtgtttataaatggtgggtaatcctcaccttacaa 26778439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Original strand, 67490 - 67526
Alignment:
Q  69 atgtgtttataaatgggggtaatcctcaccttacaaa 105  Q
    |||||||||||| |||||| |||||||||||||||||    
T  67490 atgtgtttataagtgggggcaatcctcaccttacaaa 67526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 40898794 - 40898758
Alignment:
Q  69 atgtgtttataaatgggggtaatcctcaccttacaaa 105  Q
    |||||||||||| |||||| |||||||||||||||||    
T  40898794 atgtgtttataagtgggggcaatcctcaccttacaaa 40898758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 43790933 - 43790893
Alignment:
Q  64 tgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    ||||||| ||||||||| |||||||| ||||||||||||||    
T  43790933 tgaacatatgtttataattgggggtagtcctcaccttacaa 43790893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 60087 - 60127
Alignment:
Q  64 tgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    ||||||||||||||||| |||||| ||||||||||| ||||    
T  60087 tgaacatgtgtttataagtgggggcaatcctcacctcacaa 60127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 105
Target Start/End: Complemental strand, 2985307 - 2985271
Alignment:
Q  69 atgtgtttataaatgggggtaatcctcaccttacaaa 105  Q
    |||||||||||| |||||||||||||||||| |||||    
T  2985307 atgtgtttataattgggggtaatcctcacctcacaaa 2985271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 369635 - 369675
Alignment:
Q  64 tgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    |||| |||||||||||| |||||| ||||||||||||||||    
T  369635 tgaaaatgtgtttataagtgggggcaatcctcaccttacaa 369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 31004521 - 31004481
Alignment:
Q  64 tgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    ||||||||||||||||| |||||| ||||||||||| ||||    
T  31004521 tgaacatgtgtttataagtgggggcaatcctcacctcacaa 31004481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Complemental strand, 31181597 - 31181557
Alignment:
Q  64 tgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    ||||||||||||||||| |||||| ||||||||||| ||||    
T  31181597 tgaacatgtgtttataagtgggggcaatcctcacctcacaa 31181557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 104
Target Start/End: Original strand, 52907384 - 52907424
Alignment:
Q  64 tgaacatgtgtttataaatgggggtaatcctcaccttacaa 104  Q
    ||||||||||||||||| |||||| ||||||||||| ||||    
T  52907384 tgaacatgtgtttataagtgggggcaatcctcacctcacaa 52907424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 4500 times since January 2019
Visitors: 4835