View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737_low_11 (Length: 442)
Name: NF0737_low_11
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 29 - 436
Target Start/End: Complemental strand, 30114457 - 30114064
Alignment:
| Q |
29 |
attaatggtaattgatatggcactatcgctagtggggactagcaaatagcaatttcattttcagctcttgtagnnnnnnnaat-gcaattcaccatttat |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||| |
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| T |
30114457 |
attaatggtaattgatatggcactatcgctagtggggactagcaaatagcaatttcatcttcagctcttgtagttttttttattgcaattcaccatttat |
30114358 |
T |
|
| Q |
128 |
attgtaagcatctgaatgcagatatgtaaataccaaatgaagacaaaatctttttattttataccttgataattcttattgtatgattaatttgttattt |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114357 |
attgtaagcatctgaatgcagatatgtaaataccaaatgaagacaaaatctttttattttataccttgataattcttattgtatgattaatttgttattt |
30114258 |
T |
|
| Q |
228 |
agcacctccaccctcaannnnnnncgacaaaattaatatgtagctatatatataatccagtagctaataatattattttacttatgtgtaaaaagaattg |
327 |
Q |
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||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||| |
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| T |
30114257 |
agcacctccaccctcaatttttttcggtaaaattaatatgt--------------tccagtagctaataatattattttacttatgggtaaaa-gaattg |
30114173 |
T |
|
| Q |
328 |
acattccctgtggacctagttacacttttacattctctggcacaatgcgataaaagtgacattacataagatctttcctggctaaaattaatgatgctct |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30114172 |
acattccctgtggacctagttacacttttacattctctggcacaatgcgataaaagtgacattacataagatctttcctggctaaaattaatgatgctct |
30114073 |
T |
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