View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737_low_13 (Length: 343)
Name: NF0737_low_13
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 14965771 - 14966074
Alignment:
| Q |
30 |
tttgtctagtatgattggaggtgcgattgagggatcttggcataagtcatgagagagaagcaagggttgagtgctcttctatctcttcctgatgcttttg |
129 |
Q |
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| T |
14965771 |
tttgtctagtatgatcggaggtgcgattgagggatcttggcagaagtcatgagagagaagcaagggttgagtgctcttctatctcttcctgatgctttta |
14965870 |
T |
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| Q |
130 |
tttttactggtaggagacattgtgttctgacctattggaagcaagagttgagtgctcttctctctcttctaggttaaaattagaacaaaaagtataagta |
229 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| |
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| T |
14965871 |
tttttactagtaggagacattgtgttctgacctattggaagcaagagttgagtgctcttctctcttttctaggttaaaattagaataaaaag--taagta |
14965968 |
T |
|
| Q |
230 |
ccattagtttatattttgtggtatattacaggacctgcgatctttgggatgatgatattgaatgatctttgagtagtacatttttggcagttgttgcctt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||| ||| || |
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| T |
14965969 |
ccattagtttatattttgtggtatattacaggacctgcgatctttgggatgatgatattgaatgacttttgagtagtacactttcggcagttgctgcatt |
14966068 |
T |
|
| Q |
330 |
catctc |
335 |
Q |
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| |||| |
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| T |
14966069 |
cttctc |
14966074 |
T |
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