View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0737_low_23 (Length: 291)
Name: NF0737_low_23
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_low_23 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 17945875 - 17946156
Alignment:
| Q |
1 |
aggttgttttggttttgcactttctttttgttcccaccatatgttaattccaaaaggttgtcttgcttttgcacttgttttctcgagccatttgcgagtt |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17945875 |
aggttgttttggttttacactttctttttgttcccaccatatgttaattccaaaaggttgtcttgcttttgcacttgttttctcgagccatttgcgagtt |
17945974 |
T |
|
| Q |
101 |
ccaaaaaattgatttgcttttttgacctgtaaatgtccctttgattgtgatggttgaacatccgaatgtttatggacacccaagctcannnnnnngccag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
17945975 |
ccaaaaaattgatttgcttttttgacctgtaaatgtccctttgattgtgatggttgaacatccgaatgtttatggacacccaagctcatttttttgccag |
17946074 |
T |
|
| Q |
201 |
gatagaggtcatgttcaaaaaatacagtccaatattgcttctcgtcttggcctttaataggcacactggttccactctctgc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
17946075 |
gatagaggtcatgttcaaaaaatacagtccaatattgcttctcgtcttggcctttaatgggcacactggttccgctctctgc |
17946156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 267
Target Start/End: Original strand, 17957432 - 17957613
Alignment:
| Q |
86 |
agccatttgcgagttccaaaaaattgatttgcttttttgacctgtaaatgtccctttgattgtgatggttgaacatccgaatgtttatggacacccaagc |
185 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||| || ||| | ||||||||| ||||||| ||| |||||||| || | ||||| | |
|
|
| T |
17957432 |
agccatttgcgagtaccaaatgattgacttgcttttttgactgatacttgtgtatgtgattgtgacggttgaatatctgaatgtttttgaatgcccaaac |
17957531 |
T |
|
| Q |
186 |
tcannnnnnngccaggatagaggtcatgttcaaaaaatacagtccaatattgcttctcgtcttggcctttaataggcacact |
267 |
Q |
| |
|
||| |||||||| ||||||||||||||||| || ||||||||||||||||| |||| |||| ||||||||||| |
|
|
| T |
17957532 |
tcattttttttccaggatataggtcatgttcaaaaaagacggtccaatattgcttctcttctttaccttggataggcacact |
17957613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3365 times since January 2019
Visitors: 4812