View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737_low_24 (Length: 287)
Name: NF0737_low_24
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 43 - 238
Target Start/End: Original strand, 52284725 - 52284920
Alignment:
| Q |
43 |
ggagcagagatctgaataaacgtgaggtactaactgatcaagagaggcagaaactggaagaggacaagaagaaggtaacatatattacatttttcaatta |
142 |
Q |
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| T |
52284725 |
ggagcagagatctgaataaacgtgaggtactaactgatcaagagaggcagaaactggaagaggacaagaagaaggtaacatatattacatttttcaatta |
52284824 |
T |
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| Q |
143 |
gtatatgcccattttaaatattttttgttgctgatcatatgttcttatctaccattgtccttgcaaaaaattagacccgtctttgtcgatggtctg |
238 |
Q |
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| T |
52284825 |
atatatgcccatattaaatattttttgttgctgatcatatgttcttatctaccattgtccttgcaaaaaattagacccgtctttgtcgatggtctg |
52284920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 54792058 - 54792254
Alignment:
| Q |
43 |
ggagcagagatctgaataaacgtgaggtactaactgatcaagagaggcagaaactggaagaggacaagaagaaggtaacatatattacatttttcaatta |
142 |
Q |
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| T |
54792058 |
ggagcagagatctaaataagcgtgaggtactaactgatcaagagaggcagaaactggaagaggacaagaagaaggt---atatattgcatttttcaatta |
54792154 |
T |
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| Q |
143 |
gtatatgcccattttaaatattttttgttgctg-------atcatatgttcttatctaccattgtccttgcaaaaaattagacccgtctttgtcgatggt |
235 |
Q |
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| T |
54792155 |
gtatttgcacattttaaatattttttgttgctggtcataactcatacgttcttatctaccattgtccttgcaaaaaattagacctgtctttgtcgatggt |
54792254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 54777086 - 54776890
Alignment:
| Q |
43 |
ggagcagagatctgaataaacgtgaggtactaactgatcaagagaggcagaaactggaagaggacaagaagaaggtaacatatattacatttttcaatta |
142 |
Q |
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||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
54777086 |
ggagcagagatctaaataagcgtgaggtactaactgatcaagagagacagaaactggaagaggacaagaagaaggt---atatattgcatttttcaatta |
54776990 |
T |
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| Q |
143 |
gtatatgcccattttaaatattttttgttgctg-------atcatatgttcttatctaccattgtccttgcaaaaaattagacccgtctttgtcgatggt |
235 |
Q |
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|||| ||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
54776989 |
gtatttgcacattttaaatattttttgttgctggtcataactcatacattcttatctaccattgtccttgctaaaaattagacctgtctttgtcgatggt |
54776890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 799906 - 800078
Alignment:
| Q |
43 |
ggagcagagatctgaataaacgtgaggtactaactgatcaagagaggcagaaactggaagaggacaagaagaaggtaacatatattacattttt---caa |
139 |
Q |
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|||||||||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||| |
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| T |
799906 |
ggagcagagaccttaataagcgtgaggtactaactgatcaagagaggcagaaactagaagaggacaagaagaaggtaatgtatattacattttttggcaa |
800005 |
T |
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| Q |
140 |
ttagtatatgcccattttaaatattttttgttgctgatcatatgttcttatctaccattgtccttgcaaaaaa |
212 |
Q |
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| T |
800006 |
tcagtatatgcccattttaaatattttttactgctaatcttacactcttatctaccattgtccttgcaaaaaa |
800078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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