View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737_low_3 (Length: 687)
Name: NF0737_low_3
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 543; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 11 - 658
Target Start/End: Original strand, 54219121 - 54219779
Alignment:
| Q |
11 |
catctccaacaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgca |
110 |
Q |
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| T |
54219121 |
catctccatcaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaaggctgtgca |
54219220 |
T |
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| Q |
111 |
atctccctgaacaagaaccaatatacaagtcaat----gtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatat |
206 |
Q |
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| T |
54219221 |
atctccctgaacaagaaccaatatacaagtcaattaatgtaaagaaataatattagttgtgagacaagacataagaagtagaagaaatgatgcaagatat |
54219320 |
T |
|
| Q |
207 |
aagatataccttggaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaactaacataacaataccccaaattaaaa |
306 |
Q |
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| T |
54219321 |
aagatataccttggaaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaactaacataaaaataccccaaa-----a |
54219415 |
T |
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| Q |
307 |
tcatgtcaagtttcgtcaaattgttgaatgaaggcaaaagatgaccacaatttcttggataagaaaaacgctggttaaggaaacaaaaatagattcatta |
406 |
Q |
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| T |
54219416 |
tcatgtcaagtttcgtcaaattgttgaatgaaggcaaaagatgaccacaatttcttggataagaaaaacgctggttaaggaaacaaaaataaattcatta |
54219515 |
T |
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| Q |
407 |
ttgtgacatataaagaacatgcaatgaataaagaagcacataacggggagaacattgtcaatagtcattttcttatacaatat------------tnnnn |
494 |
Q |
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| T |
54219516 |
ttgtgacatataaagaacatgcaatgaataaagaagcacataacgggaagaacattgtcaatagtcattttcttatacaatatttaaaaaaaaaataaaa |
54219615 |
T |
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| Q |
495 |
nnnnngatgataagtaaatattcaaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgcaca |
594 |
Q |
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| T |
54219616 |
aaaaagatgataagtaaatattcaaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgcaca |
54219715 |
T |
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| Q |
595 |
atgagaaacatgtagtggattttcaggataggaaaacttaagatcaatatatgcatcaactatg |
658 |
Q |
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| T |
54219716 |
atgagaaacatgtagtggattttcaggataggaaaacttaagatcaatatatgcatcaactatg |
54219779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 31217521 - 31217613
Alignment:
| Q |
11 |
catctccaacaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatgtcaagtcttcattatccaagg |
103 |
Q |
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| T |
31217521 |
catctccacgaaaatctgaaatatcacatgatttgagagaagatttgaaacagcaaggcagtgaatctgatgtccagtcttcactatccaagg |
31217613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 519 - 601
Target Start/End: Original strand, 31255550 - 31255632
Alignment:
| Q |
519 |
aacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgcacaatgagaa |
601 |
Q |
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| T |
31255550 |
aacatacctcaagagtatcattagctagtttgagagacttgacattgctaagtccactcagtagctcaattgcacactgagaa |
31255632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 221 - 282
Target Start/End: Original strand, 31217729 - 31217790
Alignment:
| Q |
221 |
aaatgtgaagaacttccagtttaggagttttacggagaatgtctactaatagttcacaacta |
282 |
Q |
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| T |
31217729 |
aaatgtgaagaaattctagtttaggactctttcggagaatgtctgctaatacttcacaacta |
31217790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 516 - 562
Target Start/End: Original strand, 31239041 - 31239087
Alignment:
| Q |
516 |
tcaaacatacctcaatagtattatttgttagtttgagagacttgaca |
562 |
Q |
| |
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| T |
31239041 |
tcaaacatacctcgagagtatcatttgctagtttgagagacttgaca |
31239087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 17595374 - 17595307
Alignment:
| Q |
15 |
tccaacaaaatctgaaaaagaacataatttgagagaagatttgatacagcaaggcaaagaatctgatg |
82 |
Q |
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| T |
17595374 |
tccaagaaaatctgaaatagaacatactttgagagaagatgtgaaacaccaaggaaatgaatttgatg |
17595307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 518 - 592
Target Start/End: Original strand, 14728597 - 14728671
Alignment:
| Q |
518 |
aaacatacctcaatagtattatttgttagtttgagagacttgacactaacaagttcactcaatagctccattgca |
592 |
Q |
| |
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| T |
14728597 |
aaacatacctgaagagtatcatttgatattgtgagagatttgacactaccaagtcgactcaatagctcaattgca |
14728671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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