View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0737_low_39 (Length: 207)

Name: NF0737_low_39
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0737_low_39
NF0737_low_39
[»] chr7 (24 HSPs)
chr7 (1-114)||(18873307-18873420)
chr7 (1-109)||(15168122-15168230)
chr7 (1-113)||(14422930-14423043)
chr7 (1-120)||(12709833-12709951)
chr7 (1-120)||(13122904-13123022)
chr7 (1-120)||(13743656-13743774)
chr7 (1-109)||(16009523-16009631)
chr7 (1-105)||(10895795-10895900)
chr7 (1-120)||(12590633-12590751)
chr7 (1-120)||(13007379-13007497)
chr7 (1-107)||(16677240-16677348)
chr7 (1-107)||(17651476-17651584)
chr7 (54-120)||(21230949-21231015)
chr7 (54-109)||(11382871-11382926)
chr7 (54-109)||(11389348-11389403)
chr7 (54-120)||(20311039-20311107)
chr7 (46-109)||(13679485-13679548)
chr7 (55-110)||(2971254-2971309)
chr7 (55-110)||(20906461-20906516)
chr7 (55-109)||(11311059-11311113)
chr7 (74-115)||(831628-831669)
chr7 (74-115)||(1196808-1196849)
chr7 (74-115)||(34958578-34958619)
chr7 (53-109)||(46625961-46626017)
[»] chr5 (13 HSPs)
chr5 (1-114)||(22751088-22751201)
chr5 (1-121)||(38144525-38144645)
chr5 (1-109)||(28370055-28370163)
chr5 (1-109)||(19512332-19512441)
chr5 (1-114)||(23528578-23528690)
chr5 (45-109)||(18407944-18408008)
chr5 (54-120)||(22438736-22438803)
chr5 (45-109)||(23111200-23111264)
chr5 (55-110)||(19236900-19236955)
chr5 (54-121)||(42961566-42961633)
chr5 (57-110)||(22461158-22461211)
chr5 (57-110)||(22467782-22467835)
chr5 (1-121)||(34830030-34830150)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-120)||(111828-111948)
[»] chr3 (20 HSPs)
chr3 (1-109)||(14762758-14762866)
chr3 (1-107)||(20247791-20247897)
chr3 (1-107)||(38310802-38310908)
chr3 (1-109)||(9534274-9534382)
chr3 (1-107)||(24192902-24193009)
chr3 (1-110)||(23370505-23370615)
chr3 (32-120)||(41455087-41455174)
chr3 (1-110)||(24933828-24933936)
chr3 (1-120)||(16801457-16801575)
chr3 (48-109)||(18929239-18929300)
chr3 (45-109)||(17240513-17240577)
chr3 (55-110)||(13302240-13302295)
chr3 (55-110)||(13323787-13323842)
chr3 (55-110)||(12033444-12033499)
chr3 (55-110)||(13312896-13312951)
chr3 (55-110)||(17131732-17131787)
chr3 (55-110)||(51301589-51301644)
chr3 (36-110)||(10389443-10389517)
chr3 (36-110)||(10414532-10414606)
chr3 (36-110)||(10421202-10421276)
[»] scaffold0026 (2 HSPs)
scaffold0026 (1-120)||(11840-11959)
scaffold0026 (1-110)||(111632-111741)
[»] chr6 (23 HSPs)
chr6 (1-109)||(23057885-23057993)
chr6 (3-120)||(930085-930202)
chr6 (1-109)||(23839144-23839253)
chr6 (1-120)||(18800383-18800503)
chr6 (1-120)||(29614136-29614256)
chr6 (1-109)||(4477803-4477912)
chr6 (1-120)||(10986170-10986290)
chr6 (1-120)||(12168310-12168428)
chr6 (1-120)||(19287219-19287337)
chr6 (1-120)||(19785859-19785977)
chr6 (1-120)||(19878403-19878521)
chr6 (1-120)||(19884179-19884297)
chr6 (27-110)||(34639986-34640069)
chr6 (27-110)||(34646660-34646743)
chr6 (4-110)||(25469704-25469808)
chr6 (54-120)||(24512833-24512899)
chr6 (1-107)||(21565214-21565321)
chr6 (53-109)||(25397172-25397228)
chr6 (57-109)||(9187498-9187550)
chr6 (53-109)||(19471335-19471391)
chr6 (53-109)||(25348486-25348542)
chr6 (26-110)||(31252394-31252478)
chr6 (53-107)||(25598643-25598697)
[»] chr2 (15 HSPs)
chr2 (1-109)||(19661454-19661562)
chr2 (1-109)||(6483664-6483772)
chr2 (1-109)||(6487131-6487239)
chr2 (1-120)||(26583774-26583892)
chr2 (1-110)||(5706023-5706132)
chr2 (45-109)||(23265133-23265197)
chr2 (45-109)||(23280201-23280265)
chr2 (48-109)||(21908353-21908414)
chr2 (1-107)||(23089057-23089164)
chr2 (53-109)||(24661576-24661632)
chr2 (1-109)||(23101463-23101572)
chr2 (44-107)||(23878997-23879060)
chr2 (55-110)||(10577-10632)
chr2 (55-110)||(25180929-25180984)
chr2 (38-119)||(26885166-26885246)
[»] chr8 (14 HSPs)
chr8 (1-110)||(44477569-44477678)
chr8 (1-110)||(44492727-44492836)
chr8 (1-120)||(23866562-23866680)
chr8 (1-107)||(8727735-8727842)
chr8 (1-120)||(17054538-17054656)
chr8 (1-109)||(18614218-18614327)
chr8 (45-109)||(23482053-23482117)
chr8 (54-120)||(14056553-14056619)
chr8 (53-109)||(39364919-39364975)
chr8 (54-120)||(25111976-25112042)
chr8 (55-109)||(29643386-29643440)
chr8 (55-110)||(24320670-24320725)
chr8 (54-121)||(27940840-27940907)
chr8 (53-109)||(21931696-21931752)
[»] scaffold0924 (1 HSPs)
scaffold0924 (5-120)||(740-856)
[»] scaffold0247 (1 HSPs)
scaffold0247 (1-120)||(11287-11407)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-120)||(30803-30923)
[»] chr4 (12 HSPs)
chr4 (8-120)||(8045822-8045933)
chr4 (5-120)||(11848058-11848179)
chr4 (36-110)||(53483687-53483760)
chr4 (54-120)||(15408139-15408205)
chr4 (53-109)||(8834895-8834951)
chr4 (53-109)||(13888641-13888697)
chr4 (26-107)||(14486632-14486713)
chr4 (53-109)||(15245215-15245271)
chr4 (53-104)||(22724691-22724742)
chr4 (1-110)||(27906211-27906321)
chr4 (74-115)||(15747551-15747592)
chr4 (53-109)||(15308120-15308176)
[»] scaffold0058 (1 HSPs)
scaffold0058 (1-120)||(238-356)
[»] chr1 (12 HSPs)
chr1 (1-109)||(20437024-20437133)
chr1 (1-120)||(41111982-41112100)
chr1 (45-109)||(32651563-32651627)
chr1 (54-109)||(19663517-19663572)
chr1 (45-109)||(18712790-18712854)
chr1 (53-109)||(20805320-20805376)
chr1 (54-109)||(11158093-11158148)
chr1 (53-107)||(10811785-10811839)
chr1 (55-110)||(20851132-20851187)
chr1 (55-110)||(20857759-20857814)
chr1 (55-110)||(21706276-21706331)
chr1 (55-110)||(21710818-21710873)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-107)||(14398-14505)
[»] scaffold1773 (1 HSPs)
scaffold1773 (5-117)||(1129-1240)
[»] scaffold0117 (2 HSPs)
scaffold0117 (1-120)||(1887-2007)
scaffold0117 (1-120)||(8564-8684)
[»] scaffold0006 (1 HSPs)
scaffold0006 (5-117)||(50130-50241)
[»] scaffold0553 (1 HSPs)
scaffold0553 (1-110)||(10195-10305)
[»] scaffold0544 (1 HSPs)
scaffold0544 (1-110)||(1525-1635)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-121)||(18115-18236)
[»] scaffold0456 (2 HSPs)
scaffold0456 (27-114)||(904-991)
scaffold0456 (27-114)||(8049-8136)
[»] scaffold0796 (2 HSPs)
scaffold0796 (1-115)||(1727-1840)
scaffold0796 (1-115)||(5750-5863)
[»] scaffold0129 (1 HSPs)
scaffold0129 (1-116)||(45268-45383)
[»] scaffold0107 (1 HSPs)
scaffold0107 (54-120)||(40521-40587)
[»] scaffold0222 (1 HSPs)
scaffold0222 (45-109)||(16811-16875)
[»] scaffold0004 (1 HSPs)
scaffold0004 (45-109)||(116887-116951)
[»] scaffold0310 (1 HSPs)
scaffold0310 (54-120)||(17643-17710)
[»] scaffold0124 (1 HSPs)
scaffold0124 (54-109)||(34276-34331)
[»] scaffold0019 (1 HSPs)
scaffold0019 (54-120)||(135473-135539)
[»] scaffold0461 (1 HSPs)
scaffold0461 (45-109)||(8-72)
[»] scaffold0235 (1 HSPs)
scaffold0235 (56-120)||(22582-22646)
[»] scaffold0146 (1 HSPs)
scaffold0146 (45-109)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (45-109)||(101928-101992)
[»] scaffold0476 (1 HSPs)
scaffold0476 (1-107)||(3295-3402)
[»] scaffold0077 (1 HSPs)
scaffold0077 (1-107)||(3624-3731)
[»] scaffold0815 (1 HSPs)
scaffold0815 (58-120)||(1453-1515)
[»] scaffold2054 (1 HSPs)
scaffold2054 (21-120)||(680-780)
[»] scaffold0609 (1 HSPs)
scaffold0609 (26-110)||(5857-5941)
[»] scaffold0138 (1 HSPs)
scaffold0138 (53-109)||(12296-12352)
[»] scaffold0790 (1 HSPs)
scaffold0790 (88-123)||(5487-5522)
[»] scaffold0317 (1 HSPs)
scaffold0317 (46-109)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (54-109)||(14997-15052)
[»] scaffold0001 (1 HSPs)
scaffold0001 (38-119)||(493019-493099)
[»] scaffold0096 (1 HSPs)
scaffold0096 (53-113)||(39503-39563)
[»] scaffold0348 (1 HSPs)
scaffold0348 (55-110)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (55-110)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (55-110)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (55-109)||(1913-1967)
[»] scaffold0261 (1 HSPs)
scaffold0261 (55-120)||(23559-23624)
[»] scaffold0453 (1 HSPs)
scaffold0453 (26-110)||(10550-10634)
[»] scaffold0335 (1 HSPs)
scaffold0335 (53-109)||(2628-2684)
[»] scaffold0003 (2 HSPs)
scaffold0003 (95-123)||(80293-80321)
scaffold0003 (95-123)||(100015-100043)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 18873307 - 18873420
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  18873307 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacc 18873406  T
Q  101 cttaccttagtttt 114  Q
    ||||||||||||||    
T  18873407 cttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 15168122 - 15168230
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15168122 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 15168221  T
Q  101 cttacctta 109  Q
    |||||||||    
T  15168222 cttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 14422930 - 14423043
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14422930 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 14423029  T
Q  100 ccttaccttagttt 113  Q
    ||||||||||||||    
T  14423030 ccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 12709951 - 12709833
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||    
T  12709951 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacc 12709853  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  12709852 cttaccttagttttgcagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 13123022 - 13122904
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||    
T  13123022 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacc 13122924  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  13122923 cttaccttagttttgcagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 13743656 - 13743774
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||    
T  13743656 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacc 13743754  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  13743755 cttaccttagttttgcagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 16009523 - 16009631
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  16009523 atcatcatcaaaccttaacccacaatttatcttccaaaaccatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 16009622  T
Q  101 cttacctta 109  Q
    |||||||||    
T  16009623 cttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 10895900 - 10895795
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  10895900 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcac 10895801  T
Q  100 ccttac 105  Q
    ||||||    
T  10895800 ccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 12590751 - 12590633
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  12590751 atcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 12590653  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  12590652 cttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 13007379 - 13007497
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  13007379 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 13007477  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  13007478 cttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 16677240 - 16677348
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 98  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  16677240 atcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctca 16677339  T
Q  99 cccttacct 107  Q
    |||||||||    
T  16677340 cccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 17651476 - 17651584
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 98  Q
    |||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  17651476 atcatcatcaaaccctaacccttaattttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgagagatagtctca 17651575  T
Q  99 cccttacct 107  Q
    |||||||||    
T  17651576 cccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 21231015 - 21230949
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 21230949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 20311107 - 20311039
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag--ttttgcagaa 120  Q
    ||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||  ||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaa 20311039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  46 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||| ||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  74 ttatgattatcgagagatagtctcacccttaccttagttttg 115  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  74 ttatgattatcgagagatagtctcacccttaccttagttttg 115  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  74 ttatgattatcgagagatagtctcacccttaccttagttttg 115  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||| ||||||||| ||||| || || ||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 1e-55; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 22751088 - 22751201
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  22751088 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacc 22751187  T
Q  101 cttaccttagtttt 114  Q
    ||||||||||||||    
T  22751188 cttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 38144645 - 38144525
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38144645 atcatcatcaaaccctaaccctcaatttattttccaaaattatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 38144546  T
Q  101 cttaccttagttttgcagaat 121  Q
    |||||||||||||||||||||    
T  38144545 cttaccttagttttgcagaat 38144525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 28370163 - 28370055
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28370163 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 28370064  T
Q  101 cttacctta 109  Q
    |||||||||    
T  28370063 cttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 19512332 - 19512441
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19512332 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 19512431  T
Q  100 ccttacctta 109  Q
    ||||||||||    
T  19512432 ccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 23528578 - 23528690
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  23528578 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 23528676  T
Q  101 cttaccttagtttt 114  Q
    ||||||||||||||    
T  23528677 cttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 22438803 - 22438736
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcagaa 120  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaa 22438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 42961566 - 42961633
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 121  Q
    |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 42961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  57 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 110
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  57 ttttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 34830030 - 34830150
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||| ||||| |||||||  |||||||| |||||| | |||||| | ||||| |  |||||||||||||||| ||||  ||||| || ||||| || |||    
T  34830030 atcagcatcataccctaattctcaattttatcttcaagaactattctattagattgattttcagaaattatacatta-aattattgaaagataatcccac 34830128  T
Q  100 ccttaccttagttttgcagaat 121  Q
    |||||||||||  |||||||||    
T  34830129 ccttaccttagaattgcagaat 34830150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 111828 - 111948
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaa-ttttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  111828 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcac 111927  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||||||||||||||||||    
T  111928 ccttaccttagttttgcagaa 111948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 5e-55; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 14762866 - 14762758
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14762866 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 14762767  T
Q  101 cttacctta 109  Q
    |||||||||    
T  14762766 cttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 20247897 - 20247791
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20247897 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 20247798  T
Q  101 cttacct 107  Q
    |||||||    
T  20247797 cttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 38310908 - 38310802
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38310908 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacc 38310809  T
Q  101 cttacct 107  Q
    |||||||    
T  38310808 cttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 9534274 - 9534382
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  9534274 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 9534373  T
Q  101 cttacctta 109  Q
    |||||||||    
T  9534374 cttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 24192902 - 24193009
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24192902 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 24193001  T
Q  100 ccttacct 107  Q
    ||||||||    
T  24193002 ccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 23370615 - 23370505
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  23370615 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccac 23370516  T
Q  100 ccttaccttag 110  Q
    |||||||||||    
T  23370515 ccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 120
Target Start/End: Complemental strand, 41455174 - 41455087
Alignment:
Q  32 ttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  41455174 ttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 24933936 - 24933828
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    ||||||||||||||||||   |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  24933936 atcatcatcaaaccctaattttcatattattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 24933838  T
Q  101 cttaccttag 110  Q
    ||||||||||    
T  24933837 cttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 16801575 - 16801457
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||| |||||||| ||||||| |||||| ||| ||| ||||| |||||||||||||||||||||| || |||||||| |||||||||||||||    
T  16801575 atcatcatcaa-ccctaaccttcaattttatcttcaaaagctaagcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcac 16801478  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||||||||||||||||||    
T  16801477 ccttaccttagttttgcagaa 16801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  48 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    |||||||| |||||| | ||||||||||| || ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 10389517 - 10389443
Alignment:
Q  36 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10389517 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 10414606 - 10414532
Alignment:
Q  36 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10414606 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 10421276 - 10421202
Alignment:
Q  36 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    |||||||| ||||||| | | ||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  10421276 aaaactattcaattagattacttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 108; Significance: 2e-54; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 11959 - 11840
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11959 atcatcatcaaaccctaactctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 11860  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  11859 cttaccttagttttgcagaa 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 111632 - 111741
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  111632 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 111731  T
Q  101 cttaccttag 110  Q
    ||||||||||    
T  111732 cttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 23057885 - 23057993
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23057885 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacc 23057984  T
Q  101 cttacctta 109  Q
    |||||||||    
T  23057985 cttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 930202 - 930085
Alignment:
Q  3 catcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccct 102  Q
    |||||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  930202 catcatcaaaccctaaccctcaatttatttttcaaaactatacaattaggtcaattttcagaaactatagattatgattattgagagatagtctcaccct 930103  T
Q  103 taccttagttttgcagaa 120  Q
    ||||||||||||||||||    
T  930102 taccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 23839144 - 23839253
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaa-actatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23839144 atcatcatcaaaccctaaccctcaatttatcttccaaacactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 23839243  T
Q  100 ccttacctta 109  Q
    ||||||||||    
T  23839244 ccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 18800383 - 18800503
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18800383 atcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 18800482  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||| ||||||||||||||    
T  18800483 ccttacattagttttgcagaa 18800503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 29614256 - 29614136
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatctt-ccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29614256 atcatcatcaaaccctaaccctcaatttatttttccaaaattatgcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcac 29614157  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||||||||||||||||||    
T  29614156 ccttaccttagttttgcagaa 29614136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 4477803 - 4477912
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4477803 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 4477902  T
Q  100 ccttacctta 109  Q
    ||||||||||    
T  4477903 ccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 10986290 - 10986170
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||    
T  10986290 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcac 10986191  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||||||||  ||||||||    
T  10986190 ccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 12168310 - 12168428
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  12168310 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 12168408  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  12168409 cttaccttagttttgcagaa 12168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 19287219 - 19287337
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19287219 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 19287317  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  19287318 cttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 19785977 - 19785859
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  ||| ||||| |||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19785977 atcatcatcaaaccctaactttcattttattttccaaaactattcaactaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 19785879  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  19785878 cttaccttagttttgcagaa 19785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 19878403 - 19878521
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19878403 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 19878501  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  19878502 cttaccttagttttgcagaa 19878521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 19884179 - 19884297
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  19884179 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 19884277  T
Q  101 cttaccttagttttgcagaa 120  Q
    || |||||||||||||||||    
T  19884278 ctaaccttagttttgcagaa 19884297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  27 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    |||| |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34640069 ttattttccaaaactattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 34646743 - 34646660
Alignment:
Q  27 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  34646743 ttattttccaaaattattcaattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 25469808 - 25469704
Alignment:
Q  4 atcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctt 103  Q
    |||||||||||||||   |||  |||| ||||||||| || ||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||    
T  25469808 atcatcaaaccctaattttcatattattttccaaaaccattcaattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcaccctt 25469711  T
Q  104 accttag 110  Q
    |||||||    
T  25469710 accttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 24512899 - 24512833
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||| |||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaa 24512833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 21565321 - 21565214
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 98  Q
    |||||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  21565321 atcatcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctca 21565223  T
Q  99 cccttacct 107  Q
    |||||||||    
T  21565222 cccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  57 ttttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 31252394 - 31252478
Alignment:
Q  26 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || ||  | ||||| |||||||||||||||||    
T  31252394 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 107
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 107  Q
    |||||||||||||| |||| |||||||| || ||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 19661562 - 19661454
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19661562 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacc 19661463  T
Q  101 cttacctta 109  Q
    |||||||||    
T  19661462 cttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 6483664 - 6483772
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6483664 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 6483763  T
Q  101 cttacctta 109  Q
    |||||||||    
T  6483764 cttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 6487131 - 6487239
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6487131 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 6487230  T
Q  101 cttacctta 109  Q
    |||||||||    
T  6487231 cttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 26583774 - 26583892
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  26583774 atcatcatcaagccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 26583872  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  26583873 cttaccttagttttgcagaa 26583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 5706132 - 5706023
Alignment:
Q  1 atcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||  |||||||||||||||    
T  5706132 atcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattaatgagagatagtctcac 5706034  T
Q  100 ccttaccttag 110  Q
    |||||||||||    
T  5706033 ccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 109
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  48 ttaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||| ||||||||||||||||||| || |||||||| |||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 23089164 - 23089057
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 98  Q
    |||||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  23089164 atcatcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctca 23089066  T
Q  99 cccttacct 107  Q
    |||||||||    
T  23089065 cccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 23101572 - 23101463
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 98  Q
    |||||||||||||||||||||||||||| ||| || ||   ||  ||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  23101572 atcatcatcaaaccctaaccctcaattttatcctc-aaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctca 23101474  T
Q  99 cccttacctta 109  Q
    |||||||||||    
T  23101473 cccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 23878997 - 23879060
Alignment:
Q  44 gcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 107  Q
    |||||||||||||||||  ||||||||| || || ||||  |||||||||||||||||||||||    
T  23878997 gcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 119
Target Start/End: Original strand, 26885166 - 26885246
Alignment:
Q  38 aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 119  Q
    |||||| | ||||| | ||||||||||||||||| |||| |||||| || ||||| || ||||||||||||||  |||||||    
T  26885166 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatcccacccttaccttagaattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 7e-51; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 44477569 - 44477678
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44477569 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 44477668  T
Q  101 cttaccttag 110  Q
    ||||||||||    
T  44477669 cttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 44492727 - 44492836
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  44492727 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacc 44492826  T
Q  101 cttaccttag 110  Q
    ||||||||||    
T  44492827 cttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 23866562 - 23866680
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||| ||||||||||||||||    
T  23866562 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcaggaattataaattatgattattgagagatagtctcacc 23866660  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  23866661 cttaccttagttttgcagaa 23866680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 8727842 - 8727735
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  8727842 atcatcgtcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagggataatctcac 8727743  T
Q  100 ccttacct 107  Q
    ||||||||    
T  8727742 ccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 17054538 - 17054656
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  17054538 atcatcatcaaaccctaactttcatcttattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacc 17054636  T
Q  101 cttaccttagttttgcagaa 120  Q
    |||||||| |||||||||||    
T  17054637 cttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 18614218 - 18614327
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||| ||| |||||||||  |||||||| |||||| | ||| || ||||| | ||||||||||||||||||| || |||||||| |||||||||||||||    
T  18614218 atcagcataaaaccctaattctcaattttatcttcaagaacaattcaattggatcaattttcagaaattatatatcatgattattgagagatagtctcac 18614317  T
Q  100 ccttacctta 109  Q
    ||||||||||    
T  18614318 ccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 14056619 - 14056553
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaa 14056553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 25111976 - 25112042
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||| ||| | | ||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaa 25112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||| | ||||||||||| || ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 27940907 - 27940840
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaat 121  Q
    |||||||||||||| ||| ||||| || || ||  | ||| |||||||||||||||||||||||||||    
T  27940907 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 27940840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 856 - 740
Alignment:
Q  5 tcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctt 103  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  856 tcatcaaaccctaaccctcaatttattttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcaccctt 757  T
Q  104 accttagttttgcagaa 120  Q
    |||||||||||||||||    
T  756 accttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 11287 - 11407
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatt-tatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  11287 atcatcatcaaaccctaaccctcaattctattttccaaaactaagcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 11386  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||||||||||||||||||    
T  11387 ccttaccttagttttgcagaa 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 30803 - 30923
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30803 atcatcatcaaaccctaatcctcaattttaccttccaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 30902  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||||||||||||||||||    
T  30903 ccttaccttagttttgcagaa 30923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 8045933 - 8045822
Alignment:
Q  8 tcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 107  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8045933 tcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttacct 8045835  T
Q  108 tagttttgcagaa 120  Q
    |||||||||||||    
T  8045834 tagttttgcagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 5 - 120
Target Start/End: Original strand, 11848058 - 11848179
Alignment:
Q  5 tcatcaaaccctaaccctcaatttatcttc------caaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctca 98  Q
    ||||||||||||||||||||||| || ||       ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  11848058 tcatcaaaccctaaccctcaattgattttaatttttcaaaactatgccactaggtcaattttcaggaattatagattatgattattgagagatagtctca 11848157  T
Q  99 cccttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||||    
T  11848158 cccttaccttagttttgcagaa 11848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 36 - 110
Target Start/End: Original strand, 53483687 - 53483760
Alignment:
Q  36 aaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    |||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  53483687 aaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 15408139 - 15408205
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| | |||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaa 15408205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 107
Target Start/End: Original strand, 14486632 - 14486713
Alignment:
Q  26 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 107  Q
    ||||||||| | ||| || ||||| | | ||||||||||||||||| |||||||| || ||  |||||||||||||||||||    
T  14486632 tttatcttcaagaacaattcaattcgattaattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 104  Q
    |||||||||||||||| || | ||| ||||| ||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 27906211 - 27906321
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||| ||||| |||||||  |||||||| |||||| | |||||| | ||||  | ||||||||||||||||| |||||||| || || ||||| || |||    
T  27906211 atcaacatcacaccctaattctcaattttatcttcaagaactattctattatattaattttcagaaattatacattatgatcattgaaagataatcccac 27906310  T
Q  100 ccttaccttag 110  Q
    ||||| |||||    
T  27906311 ccttatcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  74 ttatgattatcgagagatagtctcacccttaccttagttttg 115  Q
    |||| ||||| ||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||||| |||| ||| || ||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 238 - 356
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||    
T  238 atcatcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaa-tttcagaaattatagattatggttattgagagatagtctcacc 336  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  337 cttaccttagttttgcagaa 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 20437133 - 20437024
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20437133 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 20437034  T
Q  100 ccttacctta 109  Q
    ||||||||||    
T  20437033 ccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 41111982 - 41112100
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  41111982 atcatcatcaaaccctaactttcatcttatttttcaaaactattcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacc 41112080  T
Q  101 cttaccttagttttgcagaa 120  Q
    ||||||||||||||||||||    
T  41112081 cttaccttagttttgcagaa 41112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 53 - 107
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacct 107  Q
    |||||||||||||||| || | ||| ||||| |||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 14505 - 14398
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14505 atcatcatcaaaccctaaccctcaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcac 14406  T
Q  100 ccttacct 107  Q
    ||||||||    
T  14405 ccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 1129 - 1240
Alignment:
Q  5 tcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 104  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  1129 tcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccctta 1227  T
Q  105 ccttagttttgca 117  Q
    |||||||||||||    
T  1228 ccttagttttgca 1240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 2007 - 1887
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  2007 atcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcac 1908  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||||||||||||||||||    
T  1907 ccttaccttagttttgcagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 8684 - 8564
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  8684 atcatcatcaaaccctaaccctcaaattattttccaaaactatacaattaggtcaatttttcagaaattatagattatgattattgagatatagtctcac 8585  T
Q  100 ccttaccttagttttgcagaa 120  Q
    |||||||||||||||||||||    
T  8584 ccttaccttagttttgcagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 50130 - 50241
Alignment:
Q  5 tcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcaccctta 104  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  50130 tcatcaaaccctaaccctcaatttattttccaaaactatgcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcaccctta 50228  T
Q  105 ccttagttttgca 117  Q
    |||||||||||||    
T  50229 ccttagttttgca 50241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 10305 - 10195
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  10305 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccac 10206  T
Q  100 ccttaccttag 110  Q
    |||||||||||    
T  10205 ccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 1635 - 1525
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  1635 atcatcatcaaaccctaacccacaatttatcttccaaaaactatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccac 1536  T
Q  100 ccttaccttag 110  Q
    |||||||||||    
T  1535 ccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 18115 - 18236
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaa-ctatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    |||||||| ||||| ||||||||||||||| |||| ||| ||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  18115 atcatcattaaaccttaaccctcaatttattttcctaaagctaagcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcac 18214  T
Q  100 ccttaccttagttttgcagaat 121  Q
    ||||||||||||||||||||||    
T  18215 ccttaccttagttttgcagaat 18236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 904 - 991
Alignment:
Q  27 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 114  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  904 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 27 - 114
Target Start/End: Original strand, 8049 - 8136
Alignment:
Q  27 ttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagtttt 114  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  8049 ttatcttccaagactatgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1840 - 1727
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  1840 atcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacc 1742  T
Q  101 cttaccttagttttg 115  Q
    |||||||||||||||    
T  1741 cttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 5863 - 5750
Alignment:
Q  1 atcatcatcaaaccctaaccctcaatttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacc 100  Q
    |||||||||||||||||||  |||  |||| |||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||    
T  5863 atcatcatcaaaccctaactttcatattattttccaaaactattcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacc 5765  T
Q  101 cttaccttagttttg 115  Q
    |||||||||||||||    
T  5764 cttaccttagttttg 5750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 45383 - 45268
Alignment:
Q  1 atcatcatcaaaccctaaccctca-atttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcac 99  Q
    ||||||||||||||||||   ||| |||  | ||| |||||||| |||||||||||| |||||| ||||||||||||||||||| |||||||||||||||    
T  45383 atcatcatcaaaccctaattttcatattatttttcaaaaactattcaattaggtcaa-tttcaggaattatagattatgattattgagagatagtctcac 45285  T
Q  100 ccttaccttagttttgc 116  Q
    ||||||||||| |||||    
T  45284 ccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 40587 - 40521
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 40521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 17643 - 17710
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag-ttttgcagaa 120  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaa 17710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 135473 - 135539
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||| ||| |||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaa 135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 22646 - 22582
Alignment:
Q  56 attttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaa 22582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 45 - 109
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  45 caattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||| ||||||||||| ||||||| | ||||||||| |||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3402 - 3295
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 98  Q
    |||||||||||||||||||||||||||| |||  ||||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  3402 atcatcatcaaaccctaaccctcaattttatcc-ccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctca 3304  T
Q  99 cccttacct 107  Q
    |||||||||    
T  3303 cccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 3731 - 3624
Alignment:
Q  1 atcatcatcaaaccctaaccctcaattt-atcttccaaaactatgcaattaggtcaattttcagaaattatagattatg-attatcgagagatagtctca 98  Q
    |||||||||||||||||||||||||||| ||| || ||   || |||||||||||||||||| ||||||| | |||||  ||||  ||||||||||||||    
T  3731 atcatcatcaaaccctaaccctcaattttatcctc-aaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctca 3633  T
Q  99 cccttacct 107  Q
    |||||||||    
T  3632 cccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 58 - 120
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  58 tttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    |||||||||||||| |||| ||| || ||||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 680 - 780
Alignment:
Q  21 ctcaatttatcttccaaaactatgcaattaggtcaatttt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 119  Q
    |||||||||| ||| | |||||| |  |||||| |||||| ||||||||||| |||| ||| || || ||||| || |||||||||||||||||||||||    
T  680 ctcaatttattttcaagaactattcttttaggttaatttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcaga 779  T
Q  120 a 120  Q
    |    
T  780 a 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 5941 - 5857
Alignment:
Q  26 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||| | |||||| ||||||| | ||||||||||||||||| ||||| || || || ||||| || ||||||||||||||    
T  5941 tttatcttcaagaactattcaattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 5487 - 5522
Alignment:
Q  88 agatagtctcacccttaccttagttttgcagaataa 123  Q
    ||||||||||||||||||||||||||||||||||||    
T  5487 agatagtctcacccttaccttagttttgcagaataa 5522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 109
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  46 aattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||| |||||||||| |||||||| || ||||| || || ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  54 caattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    |||||||||||||||||| |||| ||| || ||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 493099 - 493019
Alignment:
Q  38 aactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcaga 119  Q
    |||||| | ||||| | ||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||  |||||||    
T  493099 aactattccattagattaattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 113
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttt 113  Q
    ||||||||| ||||||||| |||||||| || ||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||| | ||||||||||| |  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 55 - 110
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||||||||||| ||||||| ||| || ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||||||| ||||||| ||| || ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 23624 - 23559
Alignment:
Q  55 aattttcagaaattatagattatgattatcgagagatagtctcacccttaccttagttttgcagaa 120  Q
    ||||||||||||||||| |||||||| ||  | ||||| || ||||||||||||||  ||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcagaa 23559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0453 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 10634 - 10550
Alignment:
Q  26 tttatcttccaaaactatgcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttaccttag 110  Q
    ||||||||| | |||||| | ||||| | ||||||||||||||||| |||| ||| || || ||||| || ||| ||||||||||    
T  10634 tttatcttcaagaactattctattagattaattttcagaaattatacattaagatcattgaaagataatcccacacttaccttag 10550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0335 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  53 tcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 109  Q
    ||||||||||||| ||||| ||||| || || ||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 80321 - 80293
Alignment:
Q  95 ctcacccttaccttagttttgcagaataa 123  Q
    |||||||||||||||||||||||||||||    
T  80321 ctcacccttaccttagttttgcagaataa 80293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 100043 - 100015
Alignment:
Q  95 ctcacccttaccttagttttgcagaataa 123  Q
    |||||||||||||||||||||||||||||    
T  100043 ctcacccttaccttagttttgcagaataa 100015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 3262 times since January 2019
Visitors: 4808