View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0737_low_6 (Length: 650)
Name: NF0737_low_6
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 83 - 583
Target Start/End: Original strand, 40545760 - 40546260
Alignment:
| Q |
83 |
agaacctgtgaccagattgaaaattttgttgctattagatttctgtttagttctcttcactcatagctctgattgcaccataactttgttgcttttgcat |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
40545760 |
agaacctgtgaccagattgaaaattttgttgctattagatttctgtttagttctcttcactcatagctctgattgcaccataattttgttgcttttgcat |
40545859 |
T |
|
| Q |
183 |
ttggattgaaccttcatgtttccttgtctgagctgtagtaatttattttcagaatttatgatttgataaaatttatacgtttgattcaaagagaaattat |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40545860 |
ttggattgaaccttcatgtttccttgtctgagctgtagtaatttattttcagaatttatgatttgataaaatttatacgtttgattcaaagagaaattat |
40545959 |
T |
|
| Q |
283 |
ttatacggattaattttagcaatcatgaaggaaagtaatgcatctgattgaaacacttgtttgaaatgactgcagtttacatttattatgacggcacttt |
382 |
Q |
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||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40545960 |
ttatacggattaattttagtaatcgtgaaagaaagtaatgcatctgattgaaacacttgtttgaaatgactgcagtttacatttattatgacgccacttt |
40546059 |
T |
|
| Q |
383 |
atatctatgctgaattgcctatatttccaaatattgagatgatagagatatttgaagttttatcagttttactttgtaaaactctcatttaccaggttca |
482 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40546060 |
acatctatgctgaattgcctatatttccaaatattgagatgatagagatatttgaagttttatcatttttactttgtaaaactctcatttaccaggttca |
40546159 |
T |
|
| Q |
483 |
aattttccttacaaaacagtgtggtctccttgattttcaaacagaaacacagtaatatttggctgacttatttgaatgatatagttctcaaattttccat |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40546160 |
aattttccttacaaaacagtgtggtctccttgattttcaaacagaaacacagtaatatttggctgacttatttgaatgatatagttctcaaattttccat |
40546259 |
T |
|
| Q |
583 |
g |
583 |
Q |
| |
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| |
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|
| T |
40546260 |
g |
40546260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 251 - 416
Target Start/End: Original strand, 31790258 - 31790423
Alignment:
| Q |
251 |
aaatttatacgtttgattcaaagagaaattatttatacggattaattttagcaatcatgaaggaaagtaatgcatctgattgaaacacttgtttgaaatg |
350 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||| |||||||||||||| |||| |||| | ||||||||||| |
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| T |
31790258 |
aaatttatacgtttgattcaaatagaaattatttatacggattaaccttagtaatttcgaaagaaagtaatgcatccgattaaaacgcctgtttgaaatg |
31790357 |
T |
|
| Q |
351 |
actgcagtttacatttattatgacggcactttatatctatgctgaattgcctatatttccaaatat |
416 |
Q |
| |
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|| |||| ||||||||| ||||| | ||||||| ||||||| |||||||||||||||||||||||| |
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| T |
31790358 |
accgcagattacatttagtatgatgccactttacatctatgatgaattgcctatatttccaaatat |
31790423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 90 - 192
Target Start/End: Original strand, 31790151 - 31790253
Alignment:
| Q |
90 |
gtgaccagattgaaaattttgttgctattagatttctgtttagttctcttcactcatagctctgattgcaccataactttgttgcttttgcatttggatt |
189 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |||||| | |||||| | || ||||||||||||||||||||||| |
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| T |
31790151 |
gtgaccagattgaaacttttgttgctattagatttttgttgtgttctcttcactaatagctataattgcaacgcaattttgttgcttttgcatttggatt |
31790250 |
T |
|
| Q |
190 |
gaa |
192 |
Q |
| |
|
||| |
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|
| T |
31790251 |
gaa |
31790253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 148
Target Start/End: Original strand, 32033461 - 32033519
Alignment:
| Q |
90 |
gtgaccagattgaaaattttgttgctattagatttctgtttagttctcttcactcatag |
148 |
Q |
| |
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||||||||||||||| ||||||||||||||||||| |||| |||||||||||| |||| |
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|
| T |
32033461 |
gtgaccagattgaaacttttgttgctattagatttttgttgtgttctcttcactaatag |
32033519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 581
Target Start/End: Original strand, 31790792 - 31790835
Alignment:
| Q |
538 |
tatttggctgacttatttgaatgatatagttctcaaattttcca |
581 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
31790792 |
tatttggctgactcgtttgaatgatatagttctcatattttcca |
31790835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 150; Significance: 6e-79; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 83 - 300
Target Start/End: Original strand, 5163014 - 5163233
Alignment:
| Q |
83 |
agaacctgtgaccagattgaaaattttgttgctattagatttctgtttagttctcttcactcatagctctgattgcaccataactttgttgcttttgcat |
182 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| || |||||||||||||||| |
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| T |
5163014 |
agaacttgtgaccagattgaaaattttgttgctattagatttctgtttagttcgcttcactcatagctctgattacaccacaattttgttgcttttgcat |
5163113 |
T |
|
| Q |
183 |
ttggattgaaccttcatgtttccttgtctgagctgtagtaatttattttcagaatttatgatttgata----aaatttatacgtttgattcaaagagaaa |
278 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || || | |||||||||||||||||||| |
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| T |
5163114 |
ttggattgaaccttcatgtttcct--tctgagttgtagtaatttattttcagaatttatgatttgataaactaagttcaaacgtttgattcaaagagaaa |
5163211 |
T |
|
| Q |
279 |
ttatttatacggattaatttta |
300 |
Q |
| |
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|||||| |||||||||| |||| |
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|
| T |
5163212 |
ttatttctacggattaacttta |
5163233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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