View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0737_low_8 (Length: 536)

Name: NF0737_low_8
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0737_low_8
NF0737_low_8
[»] chr5 (21 HSPs)
chr5 (216-462)||(10215590-10215836)
chr5 (1-173)||(13855925-13856097)
chr5 (1-169)||(10105801-10105969)
chr5 (1-169)||(10109214-10109382)
chr5 (30-173)||(12104608-12104751)
chr5 (1-169)||(10212307-10212475)
chr5 (15-169)||(10209770-10209924)
chr5 (277-451)||(13854744-13854918)
chr5 (19-170)||(9674763-9674918)
chr5 (1-170)||(10102715-10102885)
chr5 (6-160)||(12109378-12109533)
chr5 (352-460)||(10211852-10211960)
chr5 (1-79)||(10215906-10215984)
chr5 (119-180)||(10215979-10216040)
chr5 (3-79)||(9660264-9660340)
chr5 (27-81)||(37278735-37278789)
chr5 (23-82)||(3467667-3467726)
chr5 (270-321)||(10104247-10104298)
chr5 (270-321)||(10107727-10107778)
chr5 (367-417)||(10104351-10104401)
chr5 (109-159)||(10219135-10219185)
[»] chr1 (11 HSPs)
chr1 (1-152)||(10542321-10542473)
chr1 (1-85)||(42202412-42202496)
chr1 (1-85)||(42211280-42211364)
chr1 (18-82)||(43014366-43014430)
chr1 (19-82)||(45316452-45316515)
chr1 (19-85)||(42409594-42409660)
chr1 (19-86)||(2176357-2176424)
chr1 (19-81)||(45151994-45152056)
chr1 (19-85)||(42217273-42217339)
chr1 (23-83)||(42417640-42417700)
chr1 (25-81)||(51795018-51795074)
[»] chr8 (5 HSPs)
chr8 (1-160)||(31558237-31558396)
chr8 (1-82)||(31555152-31555233)
chr8 (1-82)||(31878236-31878317)
chr8 (28-75)||(13568429-13568476)
chr8 (24-82)||(4042245-4042303)
[»] chr4 (6 HSPs)
chr4 (18-82)||(17889422-17889486)
chr4 (1-86)||(25698804-25698889)
chr4 (15-63)||(36790854-36790902)
chr4 (18-82)||(49588194-49588258)
chr4 (1-67)||(46362522-46362588)
chr4 (28-68)||(20918685-20918725)
[»] chr3 (2 HSPs)
chr3 (18-82)||(21884096-21884160)
chr3 (10-85)||(46446211-46446286)
[»] chr7 (5 HSPs)
chr7 (1-82)||(3647026-3647107)
chr7 (5-82)||(3649475-3649552)
chr7 (1-73)||(3657601-3657673)
chr7 (24-77)||(3641211-3641264)
chr7 (18-65)||(19523283-19523330)
[»] chr6 (2 HSPs)
chr6 (18-82)||(33891592-33891656)
chr6 (27-81)||(27868671-27868725)
[»] chr2 (4 HSPs)
chr2 (18-87)||(5900520-5900589)
chr2 (18-73)||(26568347-26568402)
chr2 (18-55)||(43633443-43633480)
chr2 (27-80)||(2341338-2341391)


Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 216 - 462
Target Start/End: Complemental strand, 10215836 - 10215590
Alignment:
Q  216 gctacttgtttaagggagatctttaccaattgtataatatgtttaagccgattaattagtcttgagatgattgcataacttcatagacatatgttgactt 315  Q
    |||||||||  ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10215836 gctacttgtgcaagggagttctttaccacttgtataatatgtttaagctgattaattagtcttgagatgattgcataacttcatagacctatgttgactt 10215737  T
Q  316 gatttactgataataatgattagttatatgataatcagtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgca 415  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10215736 gatttattgataataatgattagttatatgataatcagtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgca 10215637  T
Q  416 tgttaacattggacatgacaaaatagggtattctgctgtcgaaatat 462  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  10215636 tgttaacaatggacatgacaaaatagggtattctgctgtcgaaatat 10215590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 13856097 - 13855925
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggt 100  Q
    |||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  | |||||||||||    
T  13856097 ccgctaatagcaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcactcggctccgtgcttgtaagaggtagaggt 13855998  T
Q  101 gctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacacccac 173  Q
     || ||  ||||||||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  13855997 cctttctttttatatgtgaactgcatagtttagtttatgaattggttgatgtgggactctatcagacacccac 13855925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 10105969 - 10105801
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggt 100  Q
    ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||  | |||||| |    
T  10105969 ccgctaattatgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgcttaaaaaaagtagagat 10105870  T
Q  101 gctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacac 169  Q
     || ||| ||||||||  ||||||||||||||||||||||| ||| |||||| ||||||| ||||||||    
T  10105869 cctttcattttatatgaaagctgcatagtttagtttatgaactgggcgatgtgggactttgtcagacac 10105801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 10109382 - 10109214
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgct-ttaaggaggtagagg 99  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || |  ||| |||||    
T  10109382 ccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgatctttacaagg-agagg 10109284  T
Q  100 tgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacac 169  Q
    | || ||  ||||||||  ||||||||||||||||||||||||||| |||||| ||||||||||||||||    
T  10109283 ttctatctttttatatgcaagctgcatagtttagtttatgaattgggcgatgtgggactttatcagacac 10109214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 12104608 - 12104751
Alignment:
Q  30 tttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttatatgtgagctgcatagt 129  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  | || |||||||| || ||  ||||||||||||||||||| |    
T  12104608 tttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttacaagaagtagaggtcctatctttttatatgtgagctgcataat 12104707  T
Q  130 ttagtttatgaattggtcgatgttggactttatcagacacccac 173  Q
    ||||||||||||||||||||||| ||||||||| ||||||||||    
T  12104708 ttagtttatgaattggtcgatgtgggactttattagacacccac 12104751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 10212307 - 10212475
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggt 100  Q
    ||||||||||| |  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |   ||||||||||||    
T  10212307 ccgctaattgtgacactcacacagtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtacctattggaggtagaggt 10212406  T
Q  101 gctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacac 169  Q
      | ||| ||||||||||| | ||||||||||||||||| |||||| ||||| |||| |||||||||||    
T  10212407 catttcattttatatgtgatcagcatagtttagtttatgcattggtagatgtgggacattatcagacac 10212475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 15 - 169
Target Start/End: Original strand, 10209770 - 10209924
Alignment:
Q  15 gctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgtcaatttata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| |  | | | |||| || ||  ||||||    
T  10209770 gctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgttcatcacacggctccgtgattttaacaaggataggtcctatctttttata 10209869  T
Q  115 tgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacac 169  Q
    ||  ||||||||||||||||||||||||||| |||||| ||||||||| ||||||    
T  10209870 tgcaagctgcatagtttagtttatgaattgggcgatgtgggactttattagacac 10209924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 277 - 451
Target Start/End: Original strand, 13854744 - 13854918
Alignment:
Q  277 ttgagatgattgcataacttcatagacatatgttgacttgatttactgataataatgattagttatatgataatcagtaacattctggagatagtggttt 376  Q
    |||| ||||| ||||||||||||||||  ||| ||||||||||||  ||| | ||||||| ||||| |||||||||||||| ||| ||||||||| ||||    
T  13854744 ttgaaatgatagcataacttcatagaccaatgctgacttgatttatggatgacaatgatttgttatttgataatcagtaacgttccggagatagtagttt 13854843  T
Q  377 ctgcaatacaatgttactcttggcactagtcatttcgcatgttaacattggacatgacaaaatagggtattctgc 451  Q
     |||||| | |||||| |||| ||||||||||||||| ||||||||| ||| || ||||||| ||||||||||||    
T  13854844 ttgcaatgccatgttattcttagcactagtcatttcgtatgttaacaatggccaggacaaaagagggtattctgc 13854918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 9674763 - 9674918
Alignment:
Q  19 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacaca---cggctccgtgctttaaggaggtagaggtgctgtcaatttatat 115  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||| ||||   ||||||||||||||||  |||||||||| || | | |||||||    
T  9674763 acacggtattctttagtaaaaggcgaaagaatagttcactttgtgatcatcacacggcggctccgtgctttaaaaaggtagaggttctttaattttatat 9674862  T
Q  116 gtgagctgcatagtttagtttatgaattggtcgatgttggacttta-tcagacacc 170  Q
    |||||| ||||||||||| ||||| |||||  ||||| |||||||| |||||||||    
T  9674863 gtgagcagcatagtttagcttatgcattggaggatgtgggactttagtcagacacc 9674918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 10102885 - 10102715
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt--gctttaaggaggtagag 98  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    |||||  || | |||    
T  10102885 ccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacagctccgtaaattttaacaagct-gag 10102787  T
Q  99 gtgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactttatcagacacc 170  Q
    ||  | ||  |||||| || ||| |||||||||||||||||||||||||||||| ||| |||||| ||||||    
T  10102786 gtcttttcgttttataagtaagcagcatagtttagtttatgaattggtcgatgtgggagtttatccgacacc 10102715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 6 - 160
Target Start/End: Original strand, 12109378 - 12109533
Alignment:
Q  6 aattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggtgctgt 105  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||  |||||||||||||   ||||||||||||  | |    
T  12109378 aattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagtttgctatgtgatcatcaggcggctccgtgcttattggaggtagaggtcattt 12109477  T
Q  106 caatttatatgtgagctgcatagttt-agtttatgaattggtcgatgttggacttt 160  Q
    || ||||||| ||||  || |||||| |||||||| |||||||||||| |||||||    
T  12109478 cattttatatatgagaagcttagtttcagtttatgcattggtcgatgtgggacttt 12109533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 352 - 460
Target Start/End: Complemental strand, 10211960 - 10211852
Alignment:
Q  352 agtaacattctggagatagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatgttaacattggacatgacaaaatagggtattctgc 451  Q
    ||||||||||||||||| |||||||||||||||| || ||||||||  ||||||| |||| ||||||||||| ||| || ||||||| ||||||||||||    
T  10211960 agtaacattctggagatggtggtttctgcaataccattttactcttaacactagtaattttgcatgttaacaatggccaggacaaaagagggtattctgc 10211861  T
Q  452 tgtcgaaat 460  Q
    |||||||||    
T  10211860 tgtcgaaat 10211852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 10215906 - 10215984
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctcc 79  Q
    |||||||||||||  |||||| |||||||||||||||||||| |||||||||||  ||||||||||||||||| |||||    
T  10215906 ccgctaattgtaacactcacaaggtattctttagtaaaaggcaaaagaatagtttactatgtgatcaacacacagctcc 10215984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 10215979 - 10216040
Alignment:
Q  119 agctgcatagtttagtttatgaattggtcgatgttggactttatcagacacccacaggttct 180  Q
    |||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||    
T  10215979 agctccatagtttagtttctgaattggtcgatgtgggactttatcagacacccacatgttct 10216040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 9660264 - 9660340
Alignment:
Q  3 gctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctcc 79  Q
    ||||||||| | | |||||| ||||||||||||||||||| ||| |||||||||||||||||||| |||| ||||||    
T  9660264 gctaattgtgacgttcacacagtattctttagtaaaaggcaaaataatagttcgctatgtgatcatcacaaggctcc 9660340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 37278735 - 37278789
Alignment:
Q  27 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 81  Q
    |||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  37278735 ttctttagtaaaaggcgaaagaatagttcgttatgtgctcatcacacggctccgt 37278789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Original strand, 3467667 - 3467726
Alignment:
Q  23 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    |||||||||||||||||||||||||||||||| ||| || | ||| ||||||||| ||||    
T  3467667 ggtattctttagtaaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtg 3467726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 10104247 - 10104298
Alignment:
Q  270 attagtcttgagatgattgcataacttcatagacatatgttgacttgattta 321  Q
    |||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  10104247 attagtcttgagatgattgcataatttcatagaccattgttgacttgattta 10104298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 270 - 321
Target Start/End: Original strand, 10107727 - 10107778
Alignment:
Q  270 attagtcttgagatgattgcataacttcatagacatatgttgacttgattta 321  Q
    |||||||||||||||||||||||| |||||||||   |||||||||||||||    
T  10107727 attagtcttgagatgattgcataatttcatagaccattgttgacttgattta 10107778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 367 - 417
Target Start/End: Original strand, 10104351 - 10104401
Alignment:
Q  367 atagtggtttctgcaatacaatgttactcttggcactagtcatttcgcatg 417  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||| |||||    
T  10104351 atagtagtttctgcaataccatgttactcttagcactagtcatttggcatg 10104401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 10219135 - 10219185
Alignment:
Q  109 tttatatgtgagctgcatagtttagtttatgaattggtcgatgttggactt 159  Q
    |||||| || ||| |||||||||||||||||||||||| ||||| ||||||    
T  10219135 tttataagtaagcagcatagtttagtttatgaattggttgatgtgggactt 10219185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 10542473 - 10542321
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttta-aggaggtagagg 99  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |   | |||| |    
T  10542473 ccgctaattgtaacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtgctttataactgttagatg 10542374  T
Q  100 tgctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgt 152  Q
    | || ||| ||||||||||||| || ||||| |||| ||| ||| ||||||||    
T  10542373 tcctttcattttatatgtgagcagcttagttaagttgatgtattagtcgatgt 10542321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 42202412 - 42202496
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 85  Q
    ||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42202412 ccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctccgtgctt 42202496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 42211280 - 42211364
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 85  Q
    ||||||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  42211280 ccgctaaatgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcaacacacggctccgtgctt 42211364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 43014366 - 43014430
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  43014366 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 43014430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 45316452 - 45316515
Alignment:
Q  19 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  45316452 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggctccgtg 45316515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 42409660 - 42409594
Alignment:
Q  19 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 85  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  42409660 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacagctccgtgctt 42409594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 2176357 - 2176424
Alignment:
Q  19 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttt 86  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | |||||| |||||||||||    
T  2176357 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacgtctccgtgcttt 2176424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 45152056 - 45151994
Alignment:
Q  19 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 81  Q
    |||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||    
T  45152056 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtcattatcacacggctccgt 45151994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 42217273 - 42217339
Alignment:
Q  19 acacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 85  Q
    |||| |||||||||||||||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  42217273 acacagtattctttagtaaaaggcgaaagaatagttcgctatgtcgtcatcacacggctccatgctt 42217339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 23 - 83
Target Start/End: Complemental strand, 42417700 - 42417640
Alignment:
Q  23 ggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgc 83  Q
    ||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||    
T  42417700 ggtattctttagtaaaaggcgaaagaataattcgctatgtcatcatcacacagctccgtgc 42417640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 51795074 - 51795018
Alignment:
Q  25 tattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 81  Q
    |||||||||||||||||||||| ||||||| ||||||| |||| ||||||| |||||    
T  51795074 tattctttagtaaaaggcgaaacaatagtttgctatgtcatcatcacacggttccgt 51795018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 31558237 - 31558396
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctttaaggaggtagaggt 100  Q
    ||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||  |  ||||||| ||    
T  31558237 ccgctaattgtgacgttcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccatgcttataaaaggtagaagt 31558336  T
Q  101 gctgtcaatttatatgtgagctgcatagtttagtttatgaattggtcgatgttggacttt 160  Q
    ||| ||| ||||||||  ||| || | |||  ||||||| ||||| |||||| |||||||    
T  31558337 gctttcagtttatatgcaagcagcttggttgggtttatgcattggccgatgtgggacttt 31558396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31555152 - 31555233
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31555152 ccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31555233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31878317 - 31878236
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  31878317 ccgctaattgtgacgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcatcacacggctccgtg 31878236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Original strand, 13568429 - 13568476
Alignment:
Q  28 tctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacgg 75  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||    
T  13568429 tctttagtaaaaggcgaaagaatagttcgctatgtgattatcacacgg 13568476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 4042245 - 4042303
Alignment:
Q  24 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    |||||||||||| |||||||||||||||||| ||| || | ||| ||||||||| ||||    
T  4042245 gtattctttagtcaaaggcgaaagaatagtttgctttgagctcatcacacggctgcgtg 4042303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 17889486 - 17889422
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  17889486 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 17889422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 25698889 - 25698804
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttt 86  Q
    ||||||||| | | ||||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||| ||||||||||||    
T  25698889 ccgctaattatgacgctcacacggtattctttaataaaaggcgaaagaatagtccactatgtgatcatcacacagctccgtgcttt 25698804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 36790902 - 36790854
Alignment:
Q  15 gctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtg 63  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36790902 gctcacacggtattctttagtaaaaggcgaaagaatagttcgctttgtg 36790854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 49588194 - 49588258
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||| ||||||    
T  49588194 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtg 49588258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 46362522 - 46362588
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatca 67  Q
    ||||||| ||| ||||| ||| ||||||||||||||||| |||||| ||||||||||||||| ||||    
T  46362522 ccgctaaatgtgatgctgacatggtattctttagtaaaaagcgaaataatagttcgctatgtcatca 46362588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 20918725 - 20918685
Alignment:
Q  28 tctttagtaaaaggcgaaagaatagttcgctatgtgatcaa 68  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  20918725 tctttagtaaaaggcgaaagaatagtttgctatgtgatcaa 20918685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 21884096 - 21884160
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  21884096 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgctcatcacacggctccgtg 21884160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 85
Target Start/End: Complemental strand, 46446286 - 46446211
Alignment:
Q  10 gtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgctt 85  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||| |||||    
T  46446286 gtaacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacaaggctccatgctt 46446211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 9e-22; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 3647107 - 3647026
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    |||||||| || | ||| |||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||    
T  3647107 ccgctaatagtgacgctgacacggtattctttagtaaaaggcgaaagaatagtttgctatgtcatcatcacacggctccgtg 3647026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 3649552 - 3649475
Alignment:
Q  5 taattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||  |||||||    
T  3649552 taattgtgatgctaacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacaactccgtg 3649475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 3657673 - 3657601
Alignment:
Q  1 ccgctaattgtaatgctcacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacac 73  Q
    |||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  3657673 ccgctatttgtgacgctgacacggtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacac 3657601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 3641264 - 3641211
Alignment:
Q  24 gtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggct 77  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||    
T  3641264 gtattctttagtaaaaggcgaaagaatagttcgctatgtcatcatcacacggct 3641211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 19523283 - 19523330
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgat 65  Q
    ||||||| |||||||||||||||||||||||||  |||||| ||||||    
T  19523283 cacacggaattctttagtaaaaggcgaaagaattattcgctctgtgat 19523330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 33891656 - 33891592
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtg 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||| | | ||||||| ||||||    
T  33891656 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgcttatcacacggttccgtg 33891592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 27868671 - 27868725
Alignment:
Q  27 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgt 81  Q
    ||||| |||||||| ||||| ||||||| ||||||||||||  ||||||||||||    
T  27868671 ttcttaagtaaaagacgaaacaatagtttgctatgtgatcattacacggctccgt 27868725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 87
Target Start/End: Complemental strand, 5900589 - 5900520
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccgtgcttta 87  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||| |||||| ||||    
T  5900589 cacacggtattctttagtaaaaggcgaaagaatagttcgctttgtgcttatcacacggttccgtgattta 5900520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 26568402 - 26568347
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacac 73  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||| |||||    
T  26568402 cacacggtattctttagtaaaaggcaaaagaatagttcgctatgtgctcatcacac 26568347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 43633443 - 43633480
Alignment:
Q  18 cacacggtattctttagtaaaaggcgaaagaatagttc 55  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43633443 cacacggtattctttagtaaaaggcgaaagaatagttc 43633480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 2341338 - 2341391
Alignment:
Q  27 ttctttagtaaaaggcgaaagaatagttcgctatgtgatcaacacacggctccg 80  Q
    |||||| ||||||||||||||||||||||||| |||| |||  ||| |||||||    
T  2341338 ttcttttgtaaaaggcgaaagaatagttcgctttgtgctcactacatggctccg 2341391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2668 times since January 2019
Visitors: 4796