View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0737_low_9 (Length: 485)
Name: NF0737_low_9
Description: NF0737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0737_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 12 - 457
Target Start/End: Complemental strand, 38014451 - 38014009
Alignment:
| Q |
12 |
agagatcagataaaagtaatcagttgagttgatcatttgatgaagatgccgtacgcgacgccgggaagctccgattacttggaattatatccagaaagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38014451 |
agagatcagataaaagtaatcagttgagttgatcatttgaagaagatgccgtacgcgacgccgggaagctccgattacttggaattatatccagaaagaa |
38014352 |
T |
|
| Q |
112 |
aaatatcgtattttaagaatccctacattctcggagttactgctgctgctggcattggtggtctcctcttcggttacgatactggtatgtagctaatcaa |
211 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38014351 |
aaatatcttatttcaagaatccctacattctcggagttactgctgctgctggcattggtggtctcctcttcggttacgatactggtatgtagctaatcaa |
38014252 |
T |
|
| Q |
212 |
atcaatcccctttcttaaaattgtatcttgaatgataaaacaacaaatatacttctgcgatgatgcaggtgttatttcaggggctcttctatatattaaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
38014251 |
atcaatcccctttcttaaaattgtatcttgaatgataa---atcaaatatacttctgcgatgatgcaggtgttatttctggtgctcttctatatattaaa |
38014155 |
T |
|
| Q |
312 |
gatgattttgatgatgttcgtaaaagtagcttccttcaggtacaatcttttccgcattattcagattgttttgcctactttcaattccagattgttttac |
411 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38014154 |
gatgattttgatgatgttcgtaatagtagcttccttcaggtacaatcttttccgcattattcagattgttttgcctactttcaattccagattgttttac |
38014055 |
T |
|
| Q |
412 |
atctttatggttgcttgcaggaaactattgtaagcatggcattggt |
457 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38014054 |
atctttatggttgcttgcaggaaactattgtaagcatggcattggt |
38014009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 272 - 356
Target Start/End: Original strand, 27007493 - 27007576
Alignment:
| Q |
272 |
tgatgcaggtgttatttcaggggctcttctatatattaaagatgattttgatgatgttcgtaaaagtagcttccttcaggtacaa |
356 |
Q |
| |
|
||||||||||||||| |||||||||| | | |||||||||||||||||||| ||||| | |||||||||||||||||||||| |
|
|
| T |
27007493 |
tgatgcaggtgttatatcaggggctc-tatgtatattaaagatgattttgacgatgtcaagagaagtagcttccttcaggtacaa |
27007576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 27007281 - 27007375
Alignment:
| Q |
69 |
acgccgggaagctccgattacttggaattatatccagaaagaaaaatatcgtattttaagaatccctacattctcggagttactgctgctgctgg |
163 |
Q |
| |
|
||||||||||| | ||||||| ||||| |||| ||||||||| |||| | |||| ||||||||||||||||| || |||||||||||| |||| |
|
|
| T |
27007281 |
acgccgggaagtccttattacttagaattgtatctagaaagaaagatattggatttcaagaatccctacattcttggtgttactgctgctactgg |
27007375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 457
Target Start/End: Original strand, 27008272 - 27008325
Alignment:
| Q |
400 |
agattgttttacatctttatggttgcttgcaggaaactattgtaagcatggcattggt |
457 |
Q |
| |
|
||||||||||||||||||||| || | ||||||||||||||||||||||| |||| |
|
|
| T |
27008272 |
agattgttttacatctttatgtttcc----aggaaactattgtaagcatggcactggt |
27008325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 52772089 - 52772041
Alignment:
| Q |
274 |
atgcaggtgttatttcaggggctcttctatatattaaagatgattttga |
322 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
52772089 |
atgcaggtgtgatatcaggagctcttctatatataaaagatgattttga |
52772041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 3611 times since January 2019
Visitors: 4816