View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0738_high_10 (Length: 348)

Name: NF0738_high_10
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0738_high_10
NF0738_high_10
[»] chr4 (7 HSPs)
chr4 (16-348)||(38242352-38242684)
chr4 (33-281)||(38237169-38237417)
chr4 (33-270)||(38219663-38219900)
chr4 (33-281)||(38252662-38252910)
chr4 (33-278)||(38247631-38247876)
chr4 (33-281)||(38213265-38213513)
chr4 (33-319)||(38225750-38226036)
[»] chr6 (4 HSPs)
chr6 (33-320)||(17453577-17453861)
chr6 (35-281)||(17432693-17432927)
chr6 (114-158)||(34123716-34123760)
chr6 (114-158)||(34210973-34211017)
[»] scaffold0083 (1 HSPs)
scaffold0083 (101-249)||(48989-49137)
[»] chr1 (1 HSPs)
chr1 (101-249)||(21547807-21547955)
[»] chr2 (4 HSPs)
chr2 (91-249)||(11475169-11475327)
chr2 (91-251)||(11486400-11486560)
chr2 (95-174)||(11480655-11480734)
chr2 (103-174)||(11463351-11463422)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 348
Target Start/End: Original strand, 38242352 - 38242684
Alignment:
Q  16 atgaagaacgagttgaatgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagt 115  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38242352 atgaagaacgagtagaatgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagt 38242451  T
Q  116 ttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  38242452 ttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaatgtatcccacttcatttcctgcttcgcttccatttccataa 38242551  T
Q  216 cttggtttagaagaacatataaccctcccatcctgaaaacataatccatcaatttcacaaaacaagttatttatctattataccatgtttaacttcttaa 315  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38242552 cttggtttggaagaacatataaccctcccatcctgaaaacataatccatcaatttcacaaaacaagttattgatctattataccatgtttaacttcttaa 38242651  T
Q  316 acaaaccagtatacaatgaaaacaagcaccgat 348  Q
    |||||||||||||||||||||||||||||||||    
T  38242652 acaaaccagtatacaatgaaaacaagcaccgat 38242684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 33 - 281
Target Start/End: Original strand, 38237169 - 38237417
Alignment:
Q  33 tgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagtttcaccatcaataatct 132  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| || | | |  |||||||||||||||||||||||||||||||||||||||||||||    
T  38237169 tgttctgccaccaataggtagaaaagtcccattactccggtgtgctccttggtgctgttgtagttagactctagagttaaagtttcaccatcaataatct 38237268  T
Q  133 tgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtttagaagaaca 232  Q
    |||  |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  38237269 tgacagaacctggtttaggataacaagtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtatagaggaaca 38237368  T
Q  233 tataaccctcccatcctgaaaacataatccatcaatttcacaaaacaag 281  Q
    ||||||||| |||||||||||||||||||||  ||||||||||||||||    
T  38237369 tataacccttccatcctgaaaacataatccacaaatttcacaaaacaag 38237417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 33 - 270
Target Start/End: Original strand, 38219663 - 38219900
Alignment:
Q  33 tgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagtttcaccatcaataatct 132  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||  ||| ||||||||||||||||||||||||||    
T  38219663 tgttctgccaccaataggtagaaaagtcccattacaccattgtgttcttggctattgttgtagatagagactaaagttaaagtttcaccatcaataatct 38219762  T
Q  133 tgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtttagaagaaca 232  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| || |  |||||||| |||||| ||||||||||||| |||||| | ||||| ||    
T  38219763 tgatagaacctggtttaggataacatgtggacattcctacaatgtagcctgtctcatttccagcttcgtttccatttccatatcttggtattgaagagca 38219862  T
Q  233 tataaccctcccatcctgaaaacataatccatcaattt 270  Q
    |||||||||| ||||||||||||||||||||| |||||    
T  38219863 tataaccctctcatcctgaaaacataatccataaattt 38219900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 33 - 281
Target Start/End: Original strand, 38252662 - 38252910
Alignment:
Q  33 tgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagtttcaccatcaataatct 132  Q
    |||||||||||||||| ||||||||  |||||||| || ||||| || | | |  |||||||||||||||||||||| ||||||||||||||||| ||||    
T  38252662 tgttctgccaccaatatgtagaaaagccccattactccggtgtgctccttggtgctgttgtagttagactctagagtcaaagtttcaccatcaattatct 38252761  T
Q  133 tgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtttagaagaaca 232  Q
    | |  ||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||| ||||| ||||| ||| ||||| ||||||||||    
T  38252762 taacagaacctggtttaggataacatgtggacattcctacaatgtagcctgattcatttcctgcttcacttccctttccgtaatttggtatagaagaaca 38252861  T
Q  233 tataaccctcccatcctgaaaacataatccatcaatttcacaaaacaag 281  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  38252862 tataaccctcccatcctgaaaacataatccacaaatttcacaaaacaag 38252910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 33 - 278
Target Start/End: Original strand, 38247631 - 38247876
Alignment:
Q  33 tgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagtttcaccatcaataatct 132  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| ||   | |  ||||||||||||||||||| |||||||||||||||||||||||||    
T  38247631 tgttctgccaccaataggtagaaaagtcccattactccagtgtgctccctggtgctgttgtagttagactctagggttaaagtttcaccatcaataatct 38247730  T
Q  133 tgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtttagaagaaca 232  Q
    |||  |||||||||||||||||||||||||||||||||||||| ||    || ||||||||||||||  ||||  |||||||||||||| ||||||||||    
T  38247731 tgacagaacctggtttaggataacatgtggacattcctacaatataggttgcctcatttcctgcttcatttccggttccataacttggtatagaagaaca 38247830  T
Q  233 tataaccctcccatcctgaaaacataatccatcaatttcacaaaac 278  Q
    |||||||||||||||||||||||||||||||  ||| |||||||||    
T  38247831 tataaccctcccatcctgaaaacataatccacaaatatcacaaaac 38247876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 33 - 281
Target Start/End: Original strand, 38213265 - 38213513
Alignment:
Q  33 tgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagtttcaccatcaataatct 132  Q
    |||||||||||||||| |||||||| ||||||||| |||||||| || | ||| ||| ||||||||||| ||||||| ||||||||||||||||||||||    
T  38213265 tgttctgccaccaataagtagaaaagtcccattactccagtgtgctccttgctgttgctgtagttagacactagagtcaaagtttcaccatcaataatct 38213364  T
Q  133 tgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtttagaagaaca 232  Q
    |||  |||||||||||||||||||||||||||||||||||||| ||    || ||||||||||||||  ||||| |||||||||||||| ||||||||||    
T  38213365 tgacagaacctggtttaggataacatgtggacattcctacaatatagtttgcctcatttcctgcttcatttccagttccataacttggtatagaagaaca 38213464  T
Q  233 tataaccctcccatcctgaaaacataatccatcaatttcacaaaacaag 281  Q
    ||||||||| |||||||||||||||||||||   |||||| ||||||||    
T  38213465 tataacccttccatcctgaaaacataatccacatatttcagaaaacaag 38213513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 33 - 319
Target Start/End: Original strand, 38225750 - 38226036
Alignment:
Q  33 tgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagtttcaccatcaataatct 132  Q
    |||||||||||||| | |||||||| ||||||||| |||||||| || | | |  || ||||||||||| ||||||||||||||||||||||||  ||||    
T  38225750 tgttctgccaccaacaagtagaaaagtcccattactccagtgtgctccttggtgctgctgtagttagacactagagttaaagtttcaccatcaactatct 38225849  T
Q  133 tgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtttagaagaaca 232  Q
    |||  ||||||||||||||||||||||||||||||||||||||||| || |  ||||| || |||||  |||||||||| ||||||||| |||| |||||    
T  38225850 tgacagaacctggtttaggataacatgtggacattcctacaatgtagcctgtctcattcccagcttcatttccatttccgtaacttggtatagaggaaca 38225949  T
Q  233 tataaccctcccatcctgaaaacataatccatcaatttcacaaaacaagttatttatctattataccatgtttaacttcttaaacaa 319  Q
    |||||| || ||||||||||||||| |||||   ||||| ||||||||| |||| |||||||||||||| |||||||||||||||||    
T  38225950 tataactctgccatcctgaaaacatgatccacatatttcgcaaaacaagctattaatctattataccatatttaacttcttaaacaa 38226036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 146; Significance: 7e-77; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 17453577 - 17453861
Alignment:
Q  33 tgttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagtttcaccatcaataatct 132  Q
    ||||||||||||||||||||||||| ||||||||| ||||| || |||| | | |||||||||||||| ||  |||||||| ||||||||||||| ||||    
T  17453577 tgttctgccaccaataggtagaaaagtcccattactccagtatgctctttggtgttgttgtagttagattcatgagttaaaatttcaccatcaattatct 17453676  T
Q  133 tgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtttagaagaaca 232  Q
    |||  |||||||||||||||||||| || ||||||||||||||||| || || ||||||||||||||  |||||| |||||||||||||  |||||||||    
T  17453677 tgacagaacctggtttaggataacaagtagacattcctacaatgtaccctgcctcatttcctgcttcatttccatgtccataacttggtacagaagaaca 17453776  T
Q  233 tataaccctcccatcctgaaaacataatccatcaatttcacaaaacaagttatttatctattataccatgtttaacttcttaaacaaa 320  Q
    |||||| ||||||||||||||||||||||||  ||||||||||||||||    |||| ||| |||| |||||||||||||||| ||||    
T  17453777 tataactctcccatcctgaaaacataatccacaaatttcacaaaacaag---cttatgtataatacaatgtttaacttcttaatcaaa 17453861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 35 - 281
Target Start/End: Original strand, 17432693 - 17432927
Alignment:
Q  35 ttctgccaccaataggtagaaaaatcccattacaccagtgtgttcttggctattgttgtagttagactctagagttaaagtttcaccatcaataatcttg 134  Q
    ||||||||||||||||||||||| ||||||||| |||||||| |||| | | ||| |||||||||| |||||||||||| ||||||||||| | ||||||    
T  17432693 ttctgccaccaataggtagaaaagtcccattactccagtgtggtctttggtgttggtgtagttagattctagagttaaaatttcaccatcatttatcttg 17432792  T
Q  135 attgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcgcttccatttccataacttggtttagaagaacata 234  Q
    |  |||||||||||||||||||| || ||||||||||||||||| || || ||||            ||||||| |||||||||||| ||||||||||||    
T  17432793 acagaacctggtttaggataacaagtagacattcctacaatgtaccctgcctcat------------ttccattgccataacttggtgtagaagaacata 17432880  T
Q  235 taaccctcccatcctgaaaacataatccatcaatttcacaaaacaag 281  Q
    |||||||||||||||||||||||||||||  ||||| ||| ||||||    
T  17432881 taaccctcccatcctgaaaacataatccacaaattttacagaacaag 17432927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 34123716 - 34123760
Alignment:
Q  114 gtttcaccatcaataatcttgattgaacctggtttaggataacat 158  Q
    ||||||||||||  |||||| |||||||||||||| |||||||||    
T  34123716 gtttcaccatcatcaatctttattgaacctggttttggataacat 34123760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 34210973 - 34211017
Alignment:
Q  114 gtttcaccatcaataatcttgattgaacctggtttaggataacat 158  Q
    ||||||||||||  |||||| |||||||||||||| |||||||||    
T  34210973 gtttcaccatcatcaatcttcattgaacctggttttggataacat 34211017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 49137 - 48989
Alignment:
Q  101 ctctagagttaaagtttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcg 200  Q
    ||||||||||||||||||||||| ||  |||||||| |||||||||| ||||||||| ||||||||||||||||  |||||   |||||||||||||||     
T  49137 ctctagagttaaagtttcaccattaaatatcttgatagaacctggttgaggataacaagtggacattcctacaacatatcctttttcatttcctgcttcc 49038  T
Q  201 cttccatttccataacttggtttagaagaacatataaccctcccatcct 249  Q
     |||||||||||||  ||||||| |||  |||||| ||| |||||||||    
T  49037 tttccatttccatattttggttttgaattacatattaccttcccatcct 48989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 101 - 249
Target Start/End: Complemental strand, 21547955 - 21547807
Alignment:
Q  101 ctctagagttaaagtttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatttcctgcttcg 200  Q
    ||||||| ||||||||||||||| ||  |||||||| |||||||||| ||||||||| |||| |||||||||||  || ||   |||||||||||||||     
T  21547955 ctctagaattaaagtttcaccattaagtatcttgatagaacctggttgaggataacaagtggtcattcctacaacataccctttttcatttcctgcttcc 21547856  T
Q  201 cttccatttccataacttggtttagaagaacatataaccctcccatcct 249  Q
     |||||||||||||  |||| || |||  |||||||||| |||||||||    
T  21547855 tttccatttccatattttggatttgaattacatataaccttcccatcct 21547807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 249
Target Start/End: Complemental strand, 11475327 - 11475169
Alignment:
Q  91 tgtagttagactctagagttaaagtttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatt 190  Q
    ||||||||  |||||  |||||||| ||||||||||  |||||||| |||||||||||||| |||||||| |||||||||||||| || ||    |||||    
T  11475327 tgtagttactctctaatgttaaagtctcaccatcaaatatcttgatagaacctggtttagggtaacatgttgacattcctacaatataccctttctcatt 11475228  T
Q  191 tcctgcttcgcttccatttccataacttggtttagaagaacatataaccctcccatcct 249  Q
    ||||||||  ||||| ||||| ||  ||||  | |||| ||||||||| ||||||||||    
T  11475227 tcctgctttccttccttttccgtactttgggattgaagtacatataactctcccatcct 11475169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 251
Target Start/End: Complemental strand, 11486560 - 11486400
Alignment:
Q  91 tgtagttagactctagagttaaagtttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaatgtatcccgcttcatt 190  Q
    ||||||||| |||||  |||||| ||||||||||||  |||||||| |||||||||||||| |||||||| ||||| |||||||  |||||    |||||    
T  11486560 tgtagttagtctctaatgttaaattttcaccatcaaatatcttgatagaacctggtttagggtaacatgttgacatgcctacaacatatcctttctcatt 11486461  T
Q  191 tcctgcttcgcttccatttccataacttggtttagaagaacatataaccctcccatcctga 251  Q
    |||||||    |||| ||||||||  ||||  | |||| ||||||||| || |||||||||    
T  11486460 tcctgctctctttccttttccatattttgggattgaagtacatataactcttccatcctga 11486400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 11480734 - 11480655
Alignment:
Q  95 gttagactctagagttaaagtttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaa 174  Q
    ||||| ||||| ||||||| ||||||||||||  |||||||| ||||||||| |||| ||||| || |||||||||||||    
T  11480734 gttagcctctaaagttaaaatttcaccatcaaatatcttgatagaacctggtatagggtaacaagttgacattcctacaa 11480655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 11463422 - 11463351
Alignment:
Q  103 ctagagttaaagtttcaccatcaataatcttgattgaacctggtttaggataacatgtggacattcctacaa 174  Q
    |||| |||||| ||||||||||||  | |||||| |||||||||||||| ||||| || |||||||||||||    
T  11463422 ctagtgttaaaatttcaccatcaaataacttgatagaacctggtttagggtaacaagttgacattcctacaa 11463351  T

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