View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0738_high_11 (Length: 341)

Name: NF0738_high_11
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0738_high_11
NF0738_high_11
[»] chr3 (4 HSPs)
chr3 (101-316)||(40364534-40364749)
chr3 (17-107)||(40364534-40364624)
chr3 (16-52)||(21432485-21432521)
chr3 (100-136)||(21432485-21432521)
[»] chr6 (3 HSPs)
chr6 (83-192)||(15729709-15729818)
chr6 (1-103)||(15729711-15729813)
chr6 (193-316)||(15729793-15729914)
[»] chr7 (2 HSPs)
chr7 (83-162)||(11345452-11345531)
chr7 (1-78)||(11345454-11345531)
[»] chr5 (2 HSPs)
chr5 (83-145)||(1977221-1977283)
chr5 (5-61)||(1977227-1977283)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 5e-78; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 101 - 316
Target Start/End: Original strand, 40364534 - 40364749
Alignment:
Q  101 aattgaaggatggattattttggtgactggtgtacaagaggaagcaagatgattatgatggtacagtgttgttgttcttgtagcaattgaaatgttgttg 200  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  40364534 aattgaaggatgaattattttggtgaccggtgtacacgaggaagcaagatgattatgatggtactgtgttgttgttcttctagcaattgaaatgttgttg 40364633  T
Q  201 ttcttgtagcaatcgaaggtgttttagaagtggtgttgtagaaattgaaagaagaggttgttgtttttgaannnnnnnnctaggttttgtataatgttgt 300  Q
    ||||||||||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||        || | ||||||||||||||||    
T  40364634 ttcttgtagcaattgaaggtgttttagaagttgtgttgtagaattcgaaagaagaggttgttgtttttgaattttttttctggattttgtataatgttgt 40364733  T
Q  301 tgaatgtatgatgatg 316  Q
    ||||||||||||||||    
T  40364734 tgaatgtatgatgatg 40364749  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 40364534 - 40364624
Alignment:
Q  17 aattgaaggatggattattttggtgactggtgtacaagaggaagcaagatgattatgatggtacagtgttgttgttcttgtagcaattgaa 107  Q
    |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  40364534 aattgaaggatgaattattttggtgaccggtgtacacgaggaagcaagatgattatgatggtactgtgttgttgttcttctagcaattgaa 40364624  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 21432485 - 21432521
Alignment:
Q  16 caattgaaggatggattattttggtgactggtgtaca 52  Q
    |||| |||||||||||| |||||||||||||||||||    
T  21432485 caatagaaggatggattgttttggtgactggtgtaca 21432521  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 136
Target Start/End: Original strand, 21432485 - 21432521
Alignment:
Q  100 caattgaaggatggattattttggtgactggtgtaca 136  Q
    |||| |||||||||||| |||||||||||||||||||    
T  21432485 caatagaaggatggattgttttggtgactggtgtaca 21432521  T

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Target: chr6 (Bit Score: 94; Significance: 8e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 83 - 192
Target Start/End: Original strand, 15729709 - 15729818
Alignment:
Q  83 tgttgttgttcttgtagcaattgaaggatggattattttggtgactggtgtacaagaggaagcaagatgattatgatggtacagtgttgttgttcttgta 182  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  15729709 tgttgttgtttttgtagcaattgaaggatggattattttggtgactggtgtacacgaggaagcaagatgattatgatggtatagtgttgttgttcttgta 15729808  T
Q  183 gcaattgaaa 192  Q
    ||||| ||||    
T  15729809 gcaatcgaaa 15729818  T

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Target: chr6; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 15729711 - 15729813
Alignment:
Q  1 ttgttgttcttgtagcaattgaaggatggattattttggtgactggtgtacaagaggaagcaagatgattatgatggtacagtgttgttgttcttgtagc 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||    
T  15729711 ttgttgtttttgtagcaattgaaggatggattattttggtgactggtgtacacgaggaagcaagatgattatgatggtatagtgttgttgttcttgtagc 15729810  T
Q  101 aat 103  Q
    |||    
T  15729811 aat 15729813  T

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Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 15729793 - 15729914
Alignment:
Q  193 tgttgttgttcttgtagcaatcgaaggtgttttagaagtggtgttgtagaaattgaaagaagaggttgttgtttttgaannnnnnnnctaggttttgtat 292  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||  |||||||||    
T  15729793 tgttgttgttcttgtagcaatcgaaagtgttttagaagtggtgttgtagaaattgaaagaagaggttgttgtttttgaa--ttttttctgtgttttgtat 15729890  T
Q  293 aatgttgttgaatgtatgatgatg 316  Q
    ||||||||||||||||||||||||    
T  15729891 aatgttgttgaatgtatgatgatg 15729914  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 162
Target Start/End: Original strand, 11345452 - 11345531
Alignment:
Q  83 tgttgttgttcttgtagcaattgaaggatggattattttggtgactggtgtacaagaggaagcaagatgattatgatggt 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  11345452 tgttgttgttcttgtagcaattgaaggatggattattttggtgactcgtgtacacgaggaagcaagatgattatgatggt 11345531  T

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Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 11345454 - 11345531
Alignment:
Q  1 ttgttgttcttgtagcaattgaaggatggattattttggtgactggtgtacaagaggaagcaagatgattatgatggt 78  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  11345454 ttgttgttcttgtagcaattgaaggatggattattttggtgactcgtgtacacgaggaagcaagatgattatgatggt 11345531  T

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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 83 - 145
Target Start/End: Original strand, 1977221 - 1977283
Alignment:
Q  83 tgttgttgttcttgtagcaattgaaggatggattattttggtgactggtgtacaagaggaagc 145  Q
    ||||| |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  1977221 tgttgctgtttttgtagctattgaaggatggattattttggtgactggtgtacatgaggaagc 1977283  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 1977227 - 1977283
Alignment:
Q  5 tgttcttgtagcaattgaaggatggattattttggtgactggtgtacaagaggaagc 61  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  1977227 tgtttttgtagctattgaaggatggattattttggtgactggtgtacatgaggaagc 1977283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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