View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0738_high_13 (Length: 326)
Name: NF0738_high_13
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_high_13 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 3 - 315
Target Start/End: Original strand, 20818220 - 20818535
Alignment:
| Q |
3 |
catttttctctgtttctatcctccatcattttctaaatgttg-ttttatctttcattcttttctgtatcagaatcaaagcttgaacatacccgtggatca |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20818220 |
catttttctctgtttctatcctccatcattttccaaatgttggttttatctttcattcttttctgtatcagaatcaaagcttgaacatacccgtggatca |
20818319 |
T |
|
| Q |
102 |
atccaactcttgaaagccgactttgatgcattcacggtnnnnnnnnnn--ccatcaaggttaaattcatactttgtcaatatacgattatgtgtttggtg |
199 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
20818320 |
atctaactcttgaaagccgactttgttgcattcacggtaaaaaaaataaaccatcaaggttaaattcatactttgtctatataagattatgtgtttggtg |
20818419 |
T |
|
| Q |
200 |
ggatatattttgatgtttattctatatgtctgattcacaaactagattctgcgttgctcatgtatcaacctcaattgatgttagtcttaatcaatgtaaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20818420 |
agatatattttgatgtttattctatatgtctgattcacaaactagattctgcgttgctcatgtatcaacctcaattgatgttagtcttaatcaatgtaaa |
20818519 |
T |
|
| Q |
300 |
acacaacataatatta |
315 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
20818520 |
acacaacataatatta |
20818535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5819 times since January 2019
Visitors: 4859