View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_high_18 (Length: 262)
Name: NF0738_high_18
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 30 - 262
Target Start/End: Original strand, 27261261 - 27261493
Alignment:
| Q |
30 |
agtatagctgaacttagttctttaaacaaatatgcttgaagttaaatattcatatctataagcaagtttgaattcnnnnnnngcatagtggtattctagt |
129 |
Q |
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| T |
27261261 |
agtatagctgaacttagttctttaaacaaatatgcttgaagttaaatattcatatctataagcaagtttgaattctttttttgcatagtggtattctagt |
27261360 |
T |
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| Q |
130 |
tttcaaagtagcatgttggttaaaccatgtataatattaatgaacttcaattattattgtccatgtttatctacttagagcattttcagtagtgtcttgt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261361 |
tttcaaagtagcatgttggttaaaccatgtataatattaatgaacttcaattattattgtccatgtttatctacttagagcattttcagtagtgtcttgt |
27261460 |
T |
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| Q |
230 |
tgagctctagaagttaggaacaggttcttattt |
262 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
27261461 |
tgagctctagaagttaggaacaggttcttattt |
27261493 |
T |
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