View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_high_19 (Length: 260)
Name: NF0738_high_19
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 27261523 - 27261760
Alignment:
| Q |
1 |
atgtggttgtcacattcaacaactttagtgacttaaagtgaaaaagtagacttaagaaagtaggagaaggaaaacaagttgaaagtgagataaggtgaga |
100 |
Q |
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| T |
27261523 |
atgtggttatcacattcaacaactttagtgacttaaaatgaaaaagtagacttaagaaagtaggagaaggaaaacaagttgaaagtgagataaggtgaga |
27261622 |
T |
|
| Q |
101 |
tacatgttacatagttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27261623 |
tacatgttacatagttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctatt |
27261722 |
T |
|
| Q |
201 |
caatgttggacaagttgtaacttctaagtgatgatgat |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
27261723 |
caatgttggacaagttgtaacttctaagtgatgatgat |
27261760 |
T |
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