View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_high_2 (Length: 785)
Name: NF0738_high_2
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 380 - 649
Target Start/End: Original strand, 26645263 - 26645536
Alignment:
| Q |
380 |
aagatttctgacttcgccaccttttcgggggaagatggaaaatcaactatcgagcatattggaaggttgactatgcaatgcggtgagtaataacatttat |
479 |
Q |
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| T |
26645263 |
aagattcctgacttcgtcaccttttcgggggaagatggaaaatcaactatcgagcatattggaaggttgactatgcaatgcggtgagtaataacatttat |
26645362 |
T |
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| Q |
480 |
gtggtattcctctctctctcactaaactccttacaaacatgggaagacatggaaatgtgtttccatgacaggttatattggccttagcctaaggttaagg |
579 |
Q |
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| T |
26645363 |
gtgatattcctctctctctcactaaactcaatacaaacatgggaagacatggaaatgtgtttccatgacaggttatattggccttagcctaaggttaagg |
26645462 |
T |
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| Q |
580 |
taactgatttgatgaatctgaagca----ataactagatgaatcacttgatgacttcattggaaaacagatggg |
649 |
Q |
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| T |
26645463 |
taactgatttgatgaatctaaagcaatatataattagatgaatcacttgatgacttcattggaaaacagatggg |
26645536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 57 - 218
Target Start/End: Original strand, 26644142 - 26644302
Alignment:
| Q |
57 |
gttgagctgacataaactcattggggggagaaatgtattttcgcacagtaaatatttttgttgaggcatacattaacaaacttcggtagtatccacatgt |
156 |
Q |
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| T |
26644142 |
gttgagctgacataaactcattggggggagaaatgtatgttcgcacagtaaatatttt-gttgaggcatacattaacaaacttcggtcgtatccacatgt |
26644240 |
T |
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| Q |
157 |
atcagataatcctacaacatccatatcacaacatgatgcatatgtattaccccacgcgggtt |
218 |
Q |
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| T |
26644241 |
atcagatcatcctacaacatccatataacaacatgatgcatatgtattaccccacgcgggtt |
26644302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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