View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0738_high_20 (Length: 257)
Name: NF0738_high_20
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 27261523 - 27261758
Alignment:
| Q |
1 |
atgtggttgtcacattcaacaactttagtgacttaaagtgaaaaagtagacttaagaaagtaggagaaggaaaacaagttgaaagtgagataaggtgaga |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27261523 |
atgtggttatcacattcaacaactttagtgacttaaaatgaaaaagtagacttaagaaagtaggagaaggaaaacaagttgaaagtgagataaggtgaga |
27261622 |
T |
|
| Q |
101 |
tacatgttacatagttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27261623 |
tacatgttacatagttggaataaaaaattgttgaaattcttaaaactgatgtggcatggaaagggacattaaaaatggatgaagctattatgattctatt |
27261722 |
T |
|
| Q |
201 |
caatgttggacaagttgtaacttctaagtgatgatg |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
27261723 |
caatgttggacaagttgtaacttctaagtgatgatg |
27261758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5825 times since January 2019
Visitors: 4859