View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_high_4 (Length: 565)
Name: NF0738_high_4
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 13 - 536
Target Start/End: Original strand, 34867568 - 34868091
Alignment:
| Q |
13 |
aatatatggcatgagattttaaggatcatttcggtgttatctgagtgaaaacaatatacaacctcaaaaatcaagctcaatactgaaacatggcagatta |
112 |
Q |
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| T |
34867568 |
aatatgtggcatgagattttaaggatcatttcggtgttatctgagtgaaaacaatatacaaactcaaaaatcaagctcaatactgaaacatggcagatta |
34867667 |
T |
|
| Q |
113 |
acagggtgattttactgattctatcctcgattcagttttacacagaattccccaaaatcattttagatacaggactcagatttggtttcaaatttgccaa |
212 |
Q |
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| T |
34867668 |
acagggtgattttactgattctatcctcgattcagttttacgcagaattccccaaaatcattttagatacaggacttagatttggtttcaaatttgccaa |
34867767 |
T |
|
| Q |
213 |
atccaaacctgattcttgtcttattaaccttgacaaaccataacaccactctctacacataaatgctatgtagcaccgacacgtatttgtgtccaacact |
312 |
Q |
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| T |
34867768 |
atccaaacttgattcttgtcttatcaaccttgacaaaccataacaccactctctacacataaatgctatgtagcaccgacacgtatttgtgtccaacact |
34867867 |
T |
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| Q |
313 |
gacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgtccgtgtctatatcatgtctagtgtccgtttctgtgtttca |
412 |
Q |
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| T |
34867868 |
gacacatgtgattatattgaatgatttcattttcccaaaccattcttggtgtcgacgtgtccgtgtctatatcatgtctagtgtccgtttctgtgtttca |
34867967 |
T |
|
| Q |
413 |
tgatataaatgttataattcctattcaaatgaaaatgatatcataattgcacattacacatctttcatcagagtatttgcaaaacacaaacatgttatcc |
512 |
Q |
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| T |
34867968 |
tgatataaatgttataattcctattcaaatgaaaatgatatcataattgcacattacacatctttcatctgagtatttccaaaacacaaacatgttatcc |
34868067 |
T |
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| Q |
513 |
aaaacacacttcacgtgacatttc |
536 |
Q |
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| T |
34868068 |
aaaacacacttcacgtgacatttc |
34868091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 308 - 378
Target Start/End: Original strand, 9024178 - 9024248
Alignment:
| Q |
308 |
acactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgtccgtgt |
378 |
Q |
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| T |
9024178 |
acactgacacatatgattacattgaattatgtcattttctcaaattatcatttgtgtcgacgtgtccgtgt |
9024248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 299 - 351
Target Start/End: Complemental strand, 42874588 - 42874536
Alignment:
| Q |
299 |
ttgtgtccaacactgacacatgtgattatattgaatgatttcattttcccaaa |
351 |
Q |
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| T |
42874588 |
ttgtgtccaacactgacacttgtgattacattgaattatgtcattttctcaaa |
42874536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 6736494 - 6736445
Alignment:
| Q |
361 |
gtgtcgacgtgtccgtgtctatatcatgtctagtgtccgtttctgtgttt |
410 |
Q |
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| T |
6736494 |
gtgtcgacgtgtcagtgtctttgtcatgtctagtgtccgtgtttgtgttt |
6736445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 308 - 372
Target Start/End: Original strand, 23287351 - 23287415
Alignment:
| Q |
308 |
acactgacacatgtgattatattgaatgatttcattttcccaaaccattcttcgtgtcgacgtgt |
372 |
Q |
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| T |
23287351 |
acactgacacatataattatattgaattatgtcattttcctaaattattattggtgtcgacgtgt |
23287415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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