View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0738_high_7 (Length: 481)

Name: NF0738_high_7
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0738_high_7
NF0738_high_7
[»] chr1 (2 HSPs)
chr1 (94-346)||(45645199-45645458)
chr1 (166-214)||(50155363-50155411)
[»] chr2 (3 HSPs)
chr2 (145-214)||(40255516-40255586)
chr2 (128-213)||(42818862-42818948)
chr2 (169-217)||(14803065-14803113)
[»] chr6 (4 HSPs)
chr6 (117-216)||(24985965-24986065)
chr6 (136-214)||(7649834-7649913)
chr6 (168-216)||(7384798-7384846)
chr6 (166-214)||(16121026-16121074)
[»] chr7 (2 HSPs)
chr7 (163-214)||(47538791-47538842)
chr7 (163-214)||(47545348-47545399)
[»] chr4 (2 HSPs)
chr4 (128-218)||(12746106-12746197)
chr4 (135-214)||(3345350-3345430)
[»] chr3 (3 HSPs)
chr3 (128-214)||(32711228-32711315)
chr3 (128-217)||(33068220-33068310)
chr3 (116-156)||(39682619-39682659)
[»] chr5 (2 HSPs)
chr5 (182-215)||(21022979-21023012)
chr5 (119-159)||(11089380-11089420)
[»] chr8 (2 HSPs)
chr8 (117-216)||(8688326-8688423)
chr8 (166-214)||(10184616-10184664)


Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 94 - 346
Target Start/End: Complemental strand, 45645458 - 45645199
Alignment:
Q  94 actcaattgcaacatactccctctattataa-------gtgaaaaatcattttttaagttcattgaataattataaatatggtctatattattgatcaaa 186  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  45645458 actcaattgcaacatactccctctattataacttataagtgaaaaatcattttttaaattcattgaataattagaaatatggtctatattattgaccaaa 45645359  T
Q  187 tacttcaactattcaatgaatctaaaaaatagatctctataattttaggcatgtgtttcaacacatactcctctcaaacaacttgttctagatatttata 286  Q
    || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  45645358 taattcaactattcaatgaatctaaaaaatagatctctataattttacgcatgtgtttcaacacatactcctctcaaacaactcgttctagatatttata 45645259  T
Q  287 ctgttttatctatatcaaccatcaagttatatctcttagaaatcttttataaacgatgtt 346  Q
     |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  45645258 ttgttttatctatatcaaccatcaaattatatctcttaaaaatcttttataaacgatgtt 45645199  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 50155363 - 50155411
Alignment:
Q  166 tggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    ||||||||||||| || ||||||| |||| || ||||||||||||||||    
T  50155363 tggtctatattatagaccaaatacatcaattactcaatgaatctaaaaa 50155411  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 40255516 - 40255586
Alignment:
Q  145 ttcattgaataatt-ataaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    |||||||||||||| ||| || | || |||||||||||||||||| ||||  |||||||||||||||||||    
T  40255516 ttcattgaataatttatatatttagtttatattattgatcaaatagttcagttattcaatgaatctaaaaa 40255586  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 42818862 - 42818948
Alignment:
Q  128 aaaaatcattttttaagttcattgaataatt-ataaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaa 213  Q
    |||||||| |||||||||||||||||||||| ||  ||||| |||  ||||||||||| |||| |||  ||||||||||| ||||||    
T  42818862 aaaaatcactttttaagttcattgaataattgatgcatatgatctgaattattgatcagatacatcagttattcaatgaacctaaaa 42818948  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 14803113 - 14803065
Alignment:
Q  169 tctatattattgatcaaatacttcaactattcaatgaatctaaaaaata 217  Q
    |||||||||| |||||||||| |||| ||||| || |||||||||||||    
T  14803113 tctatattatagatcaaatacatcaattattctataaatctaaaaaata 14803065  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 117 - 216
Target Start/End: Complemental strand, 24986065 - 24985965
Alignment:
Q  117 tattataagtgaaaaatcattttttaagttcattgaataatt-ataaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaaa 215  Q
    ||||||||| || || ||| |||||| |||||||| |||||| ||  |||||||||||| ||| |||||||||| |||  ||||||||||| || |||||    
T  24986065 tattataagagacaattcactttttaggttcattggataattgatgtatatggtctataatatagatcaaatacatcagttattcaatgaacctcaaaaa 24985966  T
Q  216 t 216  Q
    |    
T  24985965 t 24985965  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 214
Target Start/End: Complemental strand, 7649913 - 7649834
Alignment:
Q  136 ttttttaagttcattgaataatt-ataaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    |||||||| |||||||||||||| ||  || |||| |||||| | || ||||||| |||| |||||||||||||||||||    
T  7649913 ttttttaaattcattgaataattgatttatttggtatatattttagaccaaatacatcaattattcaatgaatctaaaaa 7649834  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 7384798 - 7384846
Alignment:
Q  168 gtctatattattgatcaaatacttcaactattcaatgaatctaaaaaat 216  Q
    |||||||||||||||||||||| |||  |||||||  ||||||||||||    
T  7384798 gtctatattattgatcaaatacatcagttattcaaccaatctaaaaaat 7384846  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 16121026 - 16121074
Alignment:
Q  166 tggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    |||||||||||||||| ||||||| |||  |||| ||||||||||||||    
T  16121026 tggtctatattattgaccaaatacatcatttatttaatgaatctaaaaa 16121074  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 47538842 - 47538791
Alignment:
Q  163 atatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    |||| |||||||||||||| ||||||| |||| |||||||| ||||||||||    
T  47538842 atatagtctatattattgaccaaatacatcaattattcaataaatctaaaaa 47538791  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 163 - 214
Target Start/End: Complemental strand, 47545399 - 47545348
Alignment:
Q  163 atatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    |||| |||||||||||||| ||||||| |||| |||||||| ||||||||||    
T  47545399 atatagtctatattattgaccaaatacatcaattattcaataaatctaaaaa 47545348  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 218
Target Start/End: Original strand, 12746106 - 12746197
Alignment:
Q  128 aaaaatcattttttaagttcattgaataatt-ataaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaaatag 218  Q
    |||| |||||||||| ||||||| ||||||  ||| ||||  |||||| |||| || |||||| | ||||||||||||||| ||||||||||    
T  12746106 aaaattcattttttaggttcattcaataatcgatatatataatctataatattaattaaatacattaactattcaatgaatttaaaaaatag 12746197  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 3345350 - 3345430
Alignment:
Q  135 attttttaagttcattgaataatt-ataaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    |||||||||||||||||||||||| ||  ||||||| | || ||  ||||| |||| |||| ||||||||||| |||||||    
T  3345350 attttttaagttcattgaataattgatgtatatggtttgtaatacggatcagatacatcaattattcaatgaacctaaaaa 3345430  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 128 - 214
Target Start/End: Original strand, 32711228 - 32711315
Alignment:
Q  128 aaaaatcattttttaagttcattgaataatt-ataaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    |||| ||| |||||| ||||||||||||||| ||  || ||| ||||||||| || || |||| |||| |||||||||||||||||||    
T  32711228 aaaagtcactttttaggttcattgaataattgatgtatttggcctatattatagaccagatacatcaattattcaatgaatctaaaaa 32711315  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 33068310 - 33068220
Alignment:
Q  128 aaaaatcattttttaagttcattgaataatta-taaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaaata 217  Q
    |||||| ||||||||  ||||||||||| ||| || || ||||||||||||| || ||||||| | |  |||||||||||| |||||||||    
T  33068310 aaaaattattttttacattcattgaatatttaatatatttggtctatattatagaccaaatacattatgtattcaatgaatataaaaaata 33068220  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 116 - 156
Target Start/End: Original strand, 39682619 - 39682659
Alignment:
Q  116 ctattataagtgaaaaatcattttttaagttcattgaataa 156  Q
    ||||||||||| |||||| |||||||| |||||||||||||    
T  39682619 ctattataagtaaaaaattattttttaggttcattgaataa 39682659  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 21022979 - 21023012
Alignment:
Q  182 tcaaatacttcaactattcaatgaatctaaaaaa 215  Q
    |||||||| |||||||||||||||||||||||||    
T  21022979 tcaaatacatcaactattcaatgaatctaaaaaa 21023012  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 11089420 - 11089380
Alignment:
Q  119 ttataagtgaaaaatcattttttaagttcattgaataatta 159  Q
    |||||||| |||||| ||||||||||||||| |||||||||    
T  11089420 ttataagtaaaaaataattttttaagttcatcgaataatta 11089380  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 117 - 216
Target Start/End: Original strand, 8688326 - 8688423
Alignment:
Q  117 tattataagtgaaaaatcattttttaagttcattgaataattataaatatggtctatattattgatcaaatacttcaactattcaatgaatctaaaaaat 216  Q
    |||||||| | ||||||  |||||||| || ||||||||| | ||  | ||| ||||||||| |||||||||| |||  |||||||| ||||||||||||    
T  8688326 tattataactaaaaaattcttttttaaatttattgaataaatgta--tttggcctatattatagatcaaatacatcacttattcaataaatctaaaaaat 8688423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 10184616 - 10184664
Alignment:
Q  166 tggtctatattattgatcaaatacttcaactattcaatgaatctaaaaa 214  Q
    ||||||||||| | ||||| |||| |||| |||||||||||||||||||    
T  10184616 tggtctatattctggatcatatacatcaattattcaatgaatctaaaaa 10184664  T

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