View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0738_high_8 (Length: 456)

Name: NF0738_high_8
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0738_high_8
NF0738_high_8
[»] chr7 (10 HSPs)
chr7 (29-427)||(22063711-22064105)
chr7 (32-427)||(22100562-22100953)
chr7 (31-380)||(22070221-22070566)
chr7 (85-380)||(22080978-22081273)
chr7 (169-244)||(22064348-22064423)
chr7 (169-237)||(6864559-6864627)
chr7 (180-240)||(20352342-20352402)
chr7 (169-240)||(20133068-20133139)
chr7 (174-240)||(20374260-20374326)
chr7 (166-239)||(18982668-18982741)
[»] scaffold0867 (1 HSPs)
scaffold0867 (32-427)||(4279-4670)
[»] chr4 (4 HSPs)
chr4 (107-236)||(11970663-11970792)
chr4 (169-233)||(11981426-11981490)
chr4 (169-238)||(53775099-53775168)
chr4 (169-237)||(3560662-3560730)
[»] chr1 (1 HSPs)
chr1 (177-233)||(15961485-15961541)
[»] chr2 (2 HSPs)
chr2 (169-238)||(5436567-5436636)
chr2 (167-238)||(20712264-20712333)
[»] scaffold0097 (1 HSPs)
scaffold0097 (167-238)||(16103-16172)
[»] chr6 (1 HSPs)
chr6 (169-212)||(20770933-20770976)
[»] chr5 (2 HSPs)
chr5 (193-236)||(18964579-18964622)
chr5 (169-213)||(29820938-29820982)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 29 - 427
Target Start/End: Complemental strand, 22064105 - 22063711
Alignment:
Q  29 aagatgaaatacataattggttcaaagatttccaaatcgctaattaacaatagttgatacataatcattcaataatacaatcaaagtcattataagaaaa 128  Q
    |||||||||||||||||||||||||||||||||||||||    ||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||    
T  22064105 aagatgaaatacataattggttcaaagatttccaaatcg----ttaacaatagccgatacataatcattcaataatacaatcaaagtcatcataagaaaa 22064010  T
Q  129 tgagcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctt 228  Q
    | |  |||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22064009 tcataacacaacttattatatagcatacatatattagcacaaattcaaacaagtaaatcattgtagaggaacttactttcaacaataagaaatcaagctt 22063910  T
Q  229 tcaacataattctgacaactgtgccgccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccat 328  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||    
T  22063909 tcaacataattctgacaattgtgccaccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttctcttgaaaaaatataat 22063810  T
Q  329 ttctggtcaataatagtgtatcgttcttctctaaaagatataatggcaacaaacaacggcacaagtcattaacattataatcactttggatattctgat 427  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  22063809 ttctggtcaataatagtgtatcgttcttctccaaaaggtataatggcaacaaacatcggcacaagtcattaacattataatcactttggatattctgat 22063711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 32 - 427
Target Start/End: Complemental strand, 22100953 - 22100562
Alignment:
Q  32 atgaaatacataattggttcaaagatttccaaatcgctaattaacaatagttgatacata-atcattcaataatacaatcaaagtcattataagaaaatg 130  Q
    ||||||| |||||||||||||||| |||||||| |    ||||||||||| ||||||| | || ||||||||||| |||| ||||||| |||||||||||    
T  22100953 atgaaatgcataattggttcaaag-tttccaaacc----attaacaatagctgatacaaacattattcaataatataatcgaagtcatgataagaaaatg 22100859  T
Q  131 agcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttc 230  Q
    | ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  22100858 atcacacaacttattatatagcatacatatattagcacaaaatcaaacaagtaaatcattgtaaaggaacttactttcaacaataagaaatcaagctttc 22100759  T
Q  231 aacataattctgacaactgtgccgccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccattt 330  Q
    |||||||||||||| | ||  || |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| |||||  ||  | | |||||    
T  22100758 aacataattctgaccattggaccaccaaggtatattgatcatttgtcctctattatctctcaaattatagagaattggtcgtctttgaagcaaatcattt 22100659  T
Q  331 ctggtcaataatagtgtatcgttcttctctaaaagatataatggcaacaaacaacggcacaagtcattaacattataatcactttggatattctgat 427  Q
     |||||||||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||    
T  22100658 atggtcaataatagtttatcgttcttctccaaaaggcataatggcaacaaacaacggcacaagtcatcaaagtgataatcactttggatattctgat 22100562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 31 - 380
Target Start/End: Complemental strand, 22070566 - 22070221
Alignment:
Q  31 gatgaaatacataattggttcaaagatttccaaatcgctaattaacaatagttgatacataatcattcaataatacaatcaaagtcattataagaaaatg 130  Q
    |||||||||||||||||||||||| ||||| ||| |     ||||||||||   ||||||||||||||||||| | |||||||||||| |||||||||||    
T  22070566 gatgaaatacataattggttcaaaaatttctaaaccc----ttaacaatagcccatacataatcattcaataaaataatcaaagtcatcataagaaaatg 22070471  T
Q  131 agcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttc 230  Q
    | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || |||||||||||||||||||||||||||||| |||||    
T  22070470 atcacacaacttattatatagcatacatatactagcacaaattcaaacaagtaaatagttctaaaggaacttactttcaacaataagaaatcaaactttc 22070371  T
Q  231 aacataattctgacaactgtgccgccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccattt 330  Q
    |||||||| ||||  | ||  |  ||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||| |||||  ||||| | |||||    
T  22070370 aacataatcctgaacattggacgaccaaggtatatggatcctttttgctatcttatctcgcaaattatagagaattggtcgtctttcaaaaaaatcattt 22070271  T
Q  331 ctggtcaataatagtgtatcgttcttctctaaaagatataatggcaacaa 380  Q
    || ||||||||||||||||| |||||||| |||||  |||||||||||||    
T  22070270 cttgtcaataatagtgtatccttcttctccaaaaggcataatggcaacaa 22070221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 85 - 380
Target Start/End: Complemental strand, 22081273 - 22080978
Alignment:
Q  85 atacataatcattcaataatacaatcaaagtcattataagaaaatgagcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaa 184  Q
    ||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||||||||||||  ||||||||| ||||| ||||||||||||||||    
T  22081273 atacataataattcaataatacaatcaaagtcatcataataaaatgatcacacaacttattatataaaatacatatattagcacaaattcaaacaagtaa 22081174  T
Q  185 atcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattctgacaactgtgccg-ccaaggtatattgatcctttttgctctgt 283  Q
    ||||||||| ||||||||||||||||  |||||||||||| |||||||||||||  |||  | || |||| |||||||||||||||| |||||||||| |    
T  22081173 atcgttgtaaaggaacttactttcaaacataagaaatcaaactttcaacataatcatgaacattg-gccgaccaaggtatattgatcttttttgctctct 22081075  T
Q  284 tatctctcaaattatagagaattggttgtcttgaaaaaataccatttctggtcaataatagtgtatcgttcttctctaaaagatataatggcaacaa 380  Q
    |||||||||||||||||||||||||| |||||  || || | |||||||  ||||||| |||||||| |||||||| |||||  |||||||||||||    
T  22081074 tatctctcaaattatagagaattggtcgtctttcaacaaaatcatttctcatcaataacagtgtatccttcttctccaaaaggcataatggcaacaa 22080978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 169 - 244
Target Start/End: Complemental strand, 22064423 - 22064348
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattctgac 244  Q
    ||||||||||||||||||||| ||| || |||||||||||||||||| |||| ||| |||||| |||||| |||||    
T  22064423 aaattcaaacaagtaaatcgtcgtaaagaaacttactttcaacaatacgaaaccaacctttcatcataatcctgac 22064348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 6864559 - 6864627
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataa 237  Q
    |||||||||||||||||| | || | ||||||||||||||||||| | |||| ||||||||||||||||    
T  6864559 aaattcaaacaagtaaatagctgaaaaggaacttactttcaacaaaacgaaaccaagctttcaacataa 6864627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 20352402 - 20352342
Alignment:
Q  180 agtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattc 240  Q
    ||||||| ||||||||| |||||||||||||| |||||||| ||| |||||||||||||||    
T  20352402 agtaaattgttgtagagaaacttactttcaacgataagaaaccaaactttcaacataattc 20352342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 20133068 - 20133139
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattc 240  Q
    ||||||||| || |||||  |||||||| |||||||||||||||||| |||| ||| |||||||||||||||    
T  20133068 aaattcaaataaataaatttttgtagagaaacttactttcaacaatatgaaaccaaactttcaacataattc 20133139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Original strand, 20374260 - 20374326
Alignment:
Q  174 caaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataattc 240  Q
    ||||||||||||| ||||||||| |||||||| ||||  ||| |||| ||| |||||||||||||||    
T  20374260 caaacaagtaaattgttgtagagaaacttactatcaatgatacgaaaccaaactttcaacataattc 20374326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 18982668 - 18982741
Alignment:
Q  166 caaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataatt 239  Q
    ||||||||||| ||||||||| |||| | || || ||||||||||| |   |||| ||||||||||||||||||    
T  18982668 caaaaattcaatcaagtaaatagttgaaaagaaatttactttcaactagtcgaaaccaagctttcaacataatt 18982741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 208; Significance: 1e-113; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 32 - 427
Target Start/End: Original strand, 4279 - 4670
Alignment:
Q  32 atgaaatacataattggttcaaagatttccaaatcgctaattaacaatagttgatacata-atcattcaataatacaatcaaagtcattataagaaaatg 130  Q
    ||||||| |||||||||||||||| |||||||| |    ||||||||||| ||||||| | || ||||||||||| |||| ||||||| |||||||||||    
T  4279 atgaaatgcataattggttcaaag-tttccaaacc----attaacaatagctgatacaaacattattcaataatataatcgaagtcatgataagaaaatg 4373  T
Q  131 agcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttc 230  Q
    | ||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  4374 atcacacaacttattatatagcatacatatattagcacaaaatcaaacaagtaaatcattgtaaaggaacttactttcaacaataagaaatcaagctttc 4473  T
Q  231 aacataattctgacaactgtgccgccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccattt 330  Q
    |||||||||||||| | ||  || |||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| |||||  ||  | | |||||    
T  4474 aacataattctgaccattggaccaccaaggtatattgatcatttgtcctctattatctctcaaattatagagaattggtcgtctttgaagcaaatcattt 4573  T
Q  331 ctggtcaataatagtgtatcgttcttctctaaaagatataatggcaacaaacaacggcacaagtcattaacattataatcactttggatattctgat 427  Q
     |||||||||||||| ||||||||||||| |||||  |||||||||||||||||||||||||||||| ||  | |||||||||||||||||||||||    
T  4574 atggtcaataatagtttatcgttcttctccaaaaggcataatggcaacaaacaacggcacaagtcatcaaagtgataatcactttggatattctgat 4670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 11970663 - 11970792
Alignment:
Q  107 aatcaaagtcattataagaaaatgagcacacaacttattatatagcatacatatactagcaaaaattcaaacaagtaaatcgttgtagaggaacttactt 206  Q
    |||||||  ||| |||||||||||| || ||||  ||||||||||||||||| || || || |||||||||||||||||| || |||||| |||||||||    
T  11970663 aatcaaaaccatcataagaaaatgatcatacaatatattatatagcatacatgtattatcacaaattcaaacaagtaaattgtcgtagagaaacttactt 11970762  T
Q  207 tcaacaataagaaatcaagctttcaacata 236  Q
    |||||||||  ||| |||||||||||||||    
T  11970763 tcaacaatacaaaaccaagctttcaacata 11970792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 169 - 233
Target Start/End: Original strand, 11981426 - 11981490
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaac 233  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||| |||| ||||||||||||    
T  11981426 aaattcaaacaagtaaattgttgtagagaaacttactttcaacaatacgaaaccaagctttcaac 11981490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 238
Target Start/End: Complemental strand, 53775168 - 53775099
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 238  Q
    ||||||||||||||||||| | | ||||||||||||||||||||    || | |||||||||||||||||    
T  53775168 aaattcaaacaagtaaatcttggaagaggaacttactttcaacacgttgataccaagctttcaacataat 53775099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 3560662 - 3560730
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataa 237  Q
    ||||||||||||||||| |   | ||||||||||||||||||||    ||||| |||||||||||||||    
T  3560662 aaattcaaacaagtaaaccaacgaagaggaacttactttcaacagattgaaattaagctttcaacataa 3560730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 177 - 233
Target Start/End: Complemental strand, 15961541 - 15961485
Alignment:
Q  177 acaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaac 233  Q
    |||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||    
T  15961541 acaagtaaatcgttgtagagaaacttactttcaacaatatgaaaccaagctttcaac 15961485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 5436567 - 5436636
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 238  Q
    |||||||||||||||| | |||| ||||||||||||||| ||| |||  ||| |||||||||||||||||    
T  5436567 aaattcaaacaagtaacttgttgaagaggaacttacttttaacgataccaaaccaagctttcaacataat 5436636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 20712264 - 20712333
Alignment:
Q  167 aaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 238  Q
    ||||||||||||||||||||| |   |||||||||||||||||||||   |||| ||||||||| |||||||    
T  20712264 aaaaattcaaacaagtaaatcata--agaggaacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 16103 - 16172
Alignment:
Q  167 aaaaattcaaacaagtaaatcgttgtagaggaacttactttcaacaataagaaatcaagctttcaacataat 238  Q
    ||||||||||||||||||||| |   |||||||||||||||||||||   |||| ||||||||| |||||||    
T  16103 aaaaattcaaacaagtaaatcata--agaggaacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 212
Target Start/End: Complemental strand, 20770976 - 20770933
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaaca 212  Q
    ||||||||||||||||||| | | ||||||||||||||||||||    
T  20770976 aaattcaaacaagtaaatcatcgaagaggaacttactttcaaca 20770933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 193 - 236
Target Start/End: Original strand, 18964579 - 18964622
Alignment:
Q  193 agaggaacttactttcaacaataagaaatcaagctttcaacata 236  Q
    |||||||||||||||||||||  ||| |||||||||||||||||    
T  18964579 agaggaacttactttcaacaagtagatatcaagctttcaacata 18964622  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 29820938 - 29820982
Alignment:
Q  169 aaattcaaacaagtaaatcgttgtagaggaacttactttcaacaa 213  Q
    |||||| |||||||||||| ||||| || ||||||||||||||||    
T  29820938 aaattcgaacaagtaaatcattgtaaagaaacttactttcaacaa 29820982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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