View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_high_9 (Length: 440)
Name: NF0738_high_9
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 30 - 200
Target Start/End: Complemental strand, 12795041 - 12794871
Alignment:
| Q |
30 |
ttttactcggggaggtgggaaaagtgtggaaaaattgtgatgtttcaaaagtgatagtgtttttgtagcaattgaatttccatttgttatcctctagagt |
129 |
Q |
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| T |
12795041 |
ttttaatcggggaggtgggaaaagtgtggaaacgttgtgatgtttcaaaagtgatagtgtttttgtagcaattgaatttccatttgttatcctctagagt |
12794942 |
T |
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| Q |
130 |
gaacttcttcaatggtagtgtagtgtttgggggtatgagagtcgaatgaacgcttttttgcgaggtatgtc |
200 |
Q |
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| T |
12794941 |
gaacttcttcaatggtagtggagtgtttgggggtatgagagtcgaatgaacgcttttttgcgaggtatgtc |
12794871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 240 - 412
Target Start/End: Complemental strand, 12794831 - 12794658
Alignment:
| Q |
240 |
cattatttttacctctaagccactagagcttctgcacattgatttgtttgggccagttaatattgcttgtatcaaagaaaagaaacatggtttggtcatt |
339 |
Q |
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| T |
12794831 |
cattatttttacctctaagccactagagcttttgcacattgatttgtttgggccagttaatattgcttgtatcaaagaaaagaaacatggtttgatcatt |
12794732 |
T |
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| Q |
340 |
gttggtgactttagcagatg-acttggatgaaatttatgagaaccaaggatgtgtcttacgatgtgtttagtgt |
412 |
Q |
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| T |
12794731 |
gttggtgactttagcagatgaacttggatgaaatttctgagaagcaaggatgtgtcttacgatgtgtttagtgt |
12794658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 412
Target Start/End: Complemental strand, 7500712 - 7500549
Alignment:
| Q |
250 |
acctctaagccactagagcttctgcacattgatttgtttgggccagttaatattgcttgtatcaaagaaaagaaacatggtttggtcattgttggtgact |
349 |
Q |
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| T |
7500712 |
acctctagaccactagagcttttgcacattgatctttttgagccaattgatactgcctcaatcaatggaaagaaatatggattgatcattgttgatgact |
7500613 |
T |
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| Q |
350 |
ttagcagat-gacttggatgaaatttatgagaaccaaggatgtgtcttacgatgtgtttagtgt |
412 |
Q |
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| T |
7500612 |
ttaacagatggacttgagtgaaattcctcaaaagcaagaatgagtcttatgatgtgtttagtgt |
7500549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 410
Target Start/End: Original strand, 10081092 - 10081186
Alignment:
| Q |
317 |
aaaagaaacatggtttggtcattgttggtgactttagcagat-gacttggatgaaatttatgagaaccaaggatgtgtcttacgatgtgtttagt |
410 |
Q |
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|||||||| |||| ||||||||||||| ||||||||||| || ||||| | ||||| | ||| || |||||||| |||||| ||||| |||||| |
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| T |
10081092 |
aaaagaaatatggattggtcattgttgatgactttagcatatggactttgctgaaactattgaaaagcaaggatgagtcttatgatgtatttagt |
10081186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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