View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_14 (Length: 420)
Name: NF0738_low_14
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 52 - 245
Target Start/End: Original strand, 29294336 - 29294529
Alignment:
| Q |
52 |
gagatgaaccaatcaaacagaagagtcaatagggagataatcaatcaaacataagaaaccactatggagagaatcaaccaaatagaataaccaataagat |
151 |
Q |
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| T |
29294336 |
gagaagaaccaatcaaacagaagaatcaatagggagataatcaatcaaacataagaaaccactatggagagaatcaaccaaatagaataaccaataagat |
29294435 |
T |
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| Q |
152 |
gaggatcaatcaaacgggagaaatgaatagggagaggagcaatcaaacacaacaatcaattggcaaagaagcaatcaaacataagaaccaatag |
245 |
Q |
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| T |
29294436 |
gaggatcaatcaaacgggagaaatgaatagggagaggagcaatcaaacacaacaatcaattggcaaagaagcaatcaaacataagaaccaatag |
29294529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 317 - 405
Target Start/End: Original strand, 29294601 - 29294689
Alignment:
| Q |
317 |
tgaatcatcataccaaccaaccgagagagaaacaacagaaaaaattcaaatttgacttcaataaaaactcttcccaaacaaattatgag |
405 |
Q |
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||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29294601 |
tgaatcatcgcaccaaccaaccgagagagaaacaacataaaaaattcaaatttgacttcaataaaaactcttcgcaaacaaattatgag |
29294689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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