View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0738_low_20 (Length: 330)
Name: NF0738_low_20
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_20 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 103 - 330
Target Start/End: Original strand, 13525089 - 13525315
Alignment:
| Q |
103 |
acattgtatgtccttttattcttataataattcaatatcttgcatgcattagtgtgagagccccctcccttgctttgtgaactctattacacgagtccct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13525089 |
acattgtatgtccttttattcttataataattcaatatcttgcatgcattagtgtgagagcccc-tcccttgctttgtgaactctattacacgagtccct |
13525187 |
T |
|
| Q |
203 |
taatttggagatgtttcttgtagtataattaatttacaggatttcaacacgtggagcattttcaaccacaagattttgatagtgatagtcggcaagggaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13525188 |
taatttggagatgtttcttgtagtataattaattaacaggatttcaacacgtggagcattttcaaccacaagattttgatagtgatagtcggcaaggaaa |
13525287 |
T |
|
| Q |
303 |
ctgtttttaagcgtggaggacaaaactt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
13525288 |
ctgtttttaagcgtggaggacaaaactt |
13525315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 103 - 330
Target Start/End: Original strand, 13614624 - 13614850
Alignment:
| Q |
103 |
acattgtatgtccttttattcttataataattcaatatcttgcatgcattagtgtgagagccccctcccttgctttgtgaactctattacacgagtccct |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
13614624 |
acattgtatgtccttttattcttataataattcaatatcttgcatgcattagtgtgagagcccc-tcccttgctttgtgaactctattacacgagtccct |
13614722 |
T |
|
| Q |
203 |
taatttggagatgtttcttgtagtataattaatttacaggatttcaacacgtggagcattttcaaccacaagattttgatagtgatagtcggcaagggaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
13614723 |
taatttggagatgtttcttgtagtataattaattaacaggatttcaacacgtggagcattttcaaccacaagattttgatagtgatagtcggcaaggaaa |
13614822 |
T |
|
| Q |
303 |
ctgtttttaagcgtggaggacaaaactt |
330 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
13614823 |
ctgtttttaagcgtggaggacaaaactt |
13614850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5286 times since January 2019
Visitors: 4847