View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_21 (Length: 328)
Name: NF0738_low_21
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 5e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 132 - 326
Target Start/End: Original strand, 17725214 - 17725411
Alignment:
| Q |
132 |
agataccttaaaagctactgcaattaaaatgtttgaagcattcaaacatt---ccctcaatatttttcaatgaattgcttgatgaacaacatcaattctt |
228 |
Q |
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| T |
17725214 |
agataccttaaaagctactgcaattaaaatgtttgaagcattcaaacattattcccttaatatttctcaatgaattgcttgatgaccaacatcaattctt |
17725313 |
T |
|
| Q |
229 |
ttgatggttctgaatttggatcaagagtgaagaacccatgctgttgtccttcaaattctacatactctatatttttaccccaattcttaagccttctt |
326 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17725314 |
ttgatggttctgaatttggatcaatagtgaagaacccatgctgttgtccttcaaattctacatactctatatttttaccccaattcttaagccttctt |
17725411 |
T |
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