View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_23 (Length: 327)
Name: NF0738_low_23
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 81 - 317
Target Start/End: Original strand, 23706616 - 23706848
Alignment:
| Q |
81 |
ggttatgcatacctatcattatcaattaagacaaagttaggaatttaaaactaatgaaaaaatgcaaatgatttccaaaacacagcatatataataggaa |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
23706616 |
ggttatgcatacctatcattatcaattaagacaaagttaggaatttaaaactaatgagaaaatgcaaatgatttccaaaacacaacatatataataggaa |
23706715 |
T |
|
| Q |
181 |
aaatcactacaaatagaacttaaaatttcaaaacatagatatccatgacctacaaaactaacatatctcaaaggttcattaattacttaccattcaaatt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
23706716 |
aaatcactacaaatagaacttaaaatttcaaaacatggatatccatgacctacaaaactaacatatctcaaaggttc----attacttaccattcagatt |
23706811 |
T |
|
| Q |
281 |
cattataacatacttcaaacttgtctcccttttcatc |
317 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
23706812 |
cattataacatacttcaaacttgtctcccttttcatc |
23706848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 81 - 317
Target Start/End: Complemental strand, 40819129 - 40818897
Alignment:
| Q |
81 |
ggttatgcatacctatcattatcaattaagacaaagttaggaatttaaaactaatgaaaaaatgcaaatgatttccaaaacacagcatatataataggaa |
180 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
40819129 |
ggttatgcatacctatcattatcaattaagacaaagttaggaatttaaaactaatgagaaaatgcaaatgatttccaaaacacaacatatataataggaa |
40819030 |
T |
|
| Q |
181 |
aaatcactacaaatagaacttaaaatttcaaaacatagatatccatgacctacaaaactaacatatctcaaaggttcattaattacttaccattcaaatt |
280 |
Q |
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|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
40819029 |
aaatcactacaaatagaacttaaaatttcaaaacatggatatccatgacctacaaaactaacatatctcaaaggttc----attacttaccattcagatt |
40818934 |
T |
|
| Q |
281 |
cattataacatacttcaaacttgtctcccttttcatc |
317 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||| |
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|
| T |
40818933 |
cattataacatacttcaaacttgtttcccttttcatc |
40818897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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