View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0738_low_28 (Length: 318)

Name: NF0738_low_28
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0738_low_28
NF0738_low_28
[»] chr1 (28 HSPs)
chr1 (79-243)||(8447940-8448100)
chr1 (36-80)||(8447852-8447896)
chr1 (36-76)||(33358073-33358113)
chr1 (37-80)||(45383880-45383923)
chr1 (36-70)||(36494567-36494601)
chr1 (36-74)||(36673649-36673687)
chr1 (1-39)||(38713619-38713657)
chr1 (37-89)||(4469330-4469382)
chr1 (36-76)||(8200191-8200231)
chr1 (1-37)||(8411704-8411740)
chr1 (1-37)||(8447785-8447821)
chr1 (1-37)||(9008274-9008310)
chr1 (36-76)||(10889961-10890001)
chr1 (1-37)||(21486303-21486339)
chr1 (36-76)||(29147789-29147829)
chr1 (1-37)||(29586042-29586078)
chr1 (1-37)||(33054074-33054110)
chr1 (1-37)||(34040486-34040522)
chr1 (1-37)||(44632577-44632613)
chr1 (1-37)||(44789129-44789165)
chr1 (1-37)||(47214257-47214293)
chr1 (5-37)||(47721462-47721494)
chr1 (36-80)||(47721525-47721569)
chr1 (5-37)||(47728454-47728486)
chr1 (36-80)||(47728517-47728561)
chr1 (1-37)||(48220130-48220166)
chr1 (1-37)||(50882096-50882132)
chr1 (1-37)||(52362531-52362567)
[»] scaffold0532 (2 HSPs)
scaffold0532 (36-76)||(11080-11120)
scaffold0532 (1-37)||(11013-11049)
[»] chr8 (22 HSPs)
chr8 (37-76)||(30439421-30439460)
chr8 (36-80)||(12366959-12367003)
chr8 (1-37)||(18651419-18651455)
chr8 (36-76)||(42110098-42110138)
chr8 (37-76)||(8645281-8645320)
chr8 (36-75)||(31597064-31597103)
chr8 (36-70)||(14707264-14707298)
chr8 (1-39)||(30135999-30136037)
chr8 (3-37)||(40739898-40739932)
chr8 (1-39)||(42569713-42569751)
chr8 (1-37)||(1633876-1633912)
chr8 (1-37)||(6991794-6991830)
chr8 (36-76)||(7478895-7478935)
chr8 (1-37)||(9549185-9549221)
chr8 (1-37)||(11017854-11017890)
chr8 (1-37)||(29991461-29991497)
chr8 (1-37)||(30439492-30439528)
chr8 (1-37)||(33589216-33589252)
chr8 (1-37)||(34718164-34718200)
chr8 (1-37)||(38234056-38234092)
chr8 (1-37)||(41159875-41159911)
chr8 (1-37)||(45529232-45529268)
[»] chr4 (29 HSPs)
chr4 (37-70)||(12799831-12799864)
chr4 (36-80)||(21172396-21172440)
chr4 (1-37)||(31076103-31076139)
chr4 (36-76)||(43769827-43769867)
chr4 (36-75)||(12138969-12139008)
chr4 (37-76)||(39344895-39344934)
chr4 (37-80)||(53299304-53299347)
chr4 (36-70)||(17475992-17476026)
chr4 (1-39)||(32696230-32696268)
chr4 (1-39)||(43769760-43769798)
chr4 (1-35)||(48335603-48335637)
chr4 (37-74)||(42959389-42959426)
chr4 (36-76)||(1815916-1815956)
chr4 (36-80)||(4949621-4949665)
chr4 (1-37)||(9118850-9118886)
chr4 (36-80)||(9362590-9362634)
chr4 (1-37)||(12112676-12112712)
chr4 (37-80)||(13263308-13263352)
chr4 (1-37)||(21617232-21617268)
chr4 (1-37)||(26206963-26206999)
chr4 (36-76)||(26718484-26718524)
chr4 (36-76)||(26731112-26731152)
chr4 (1-37)||(28458363-28458399)
chr4 (1-37)||(28657427-28657463)
chr4 (1-37)||(30079895-30079931)
chr4 (1-37)||(30170006-30170042)
chr4 (1-37)||(45143657-45143693)
chr4 (1-37)||(45152426-45152462)
chr4 (7-39)||(45851815-45851847)
[»] chr2 (29 HSPs)
chr2 (35-76)||(7648504-7648545)
chr2 (1-37)||(433899-433935)
chr2 (36-80)||(9377572-9377616)
chr2 (36-76)||(36211975-36212015)
chr2 (37-80)||(1836130-1836173)
chr2 (37-80)||(12498549-12498591)
chr2 (36-75)||(15245675-15245714)
chr2 (36-75)||(36517312-36517351)
chr2 (9-39)||(6941000-6941030)
chr2 (37-75)||(11167434-11167472)
chr2 (1-39)||(18723643-18723681)
chr2 (36-70)||(42866866-42866900)
chr2 (1-46)||(23352882-23352927)
chr2 (36-76)||(5054724-5054764)
chr2 (1-37)||(9377505-9377541)
chr2 (36-76)||(23352822-23352862)
chr2 (1-37)||(25881593-25881629)
chr2 (1-37)||(26206896-26206932)
chr2 (1-37)||(28245777-28245813)
chr2 (36-76)||(34119567-34119607)
chr2 (1-37)||(34119638-34119674)
chr2 (36-76)||(34431744-34431784)
chr2 (36-80)||(35589298-35589342)
chr2 (1-37)||(36802945-36802981)
chr2 (36-76)||(37105754-37105794)
chr2 (1-37)||(39449103-39449139)
chr2 (36-80)||(40936975-40937019)
chr2 (1-37)||(40937050-40937086)
chr2 (1-37)||(42678798-42678834)
[»] chr7 (15 HSPs)
chr7 (1-37)||(3293178-3293214)
chr7 (36-76)||(7817752-7817792)
chr7 (37-73)||(47500725-47500761)
chr7 (37-76)||(4713690-4713729)
chr7 (37-80)||(16980413-16980456)
chr7 (1-37)||(3343316-3343352)
chr7 (1-37)||(4713622-4713658)
chr7 (1-37)||(11564942-11564978)
chr7 (1-37)||(21023103-21023139)
chr7 (1-37)||(33180696-33180732)
chr7 (1-37)||(35452559-35452595)
chr7 (1-37)||(39231714-39231750)
chr7 (36-76)||(42926255-42926295)
chr7 (1-37)||(43573529-43573565)
chr7 (1-37)||(47078237-47078273)
[»] chr6 (16 HSPs)
chr6 (1-37)||(22341160-22341196)
chr6 (1-37)||(26832695-26832731)
chr6 (37-70)||(335178-335211)
chr6 (1-38)||(15318173-15318210)
chr6 (1-37)||(868938-868974)
chr6 (1-37)||(2075437-2075473)
chr6 (1-37)||(4820300-4820336)
chr6 (36-76)||(5028181-5028221)
chr6 (36-76)||(6531095-6531135)
chr6 (1-37)||(6531169-6531205)
chr6 (1-37)||(11547515-11547551)
chr6 (1-37)||(30036780-30036816)
chr6 (1-37)||(30152516-30152552)
chr6 (1-37)||(32046747-32046783)
chr6 (1-37)||(33421809-33421845)
chr6 (36-76)||(35213476-35213516)
[»] chr5 (15 HSPs)
chr5 (36-80)||(3640108-3640152)
chr5 (36-76)||(15952960-15953000)
chr5 (36-76)||(41175621-41175661)
chr5 (3-37)||(4430922-4430956)
chr5 (37-70)||(35098926-35098959)
chr5 (1-37)||(8267806-8267842)
chr5 (36-76)||(9226416-9226456)
chr5 (36-76)||(10649551-10649591)
chr5 (1-37)||(15267833-15267869)
chr5 (1-37)||(15478707-15478743)
chr5 (1-37)||(18842307-18842343)
chr5 (1-37)||(20770180-20770216)
chr5 (1-37)||(30640839-30640875)
chr5 (1-37)||(35098991-35099027)
chr5 (1-37)||(41175692-41175728)
[»] chr3 (17 HSPs)
chr3 (36-76)||(9158788-9158828)
chr3 (36-80)||(33795636-33795680)
chr3 (36-70)||(35201461-35201495)
chr3 (38-80)||(51343526-51343568)
chr3 (1-37)||(8821679-8821715)
chr3 (1-37)||(8846540-8846576)
chr3 (1-37)||(11633662-11633698)
chr3 (36-76)||(21005091-21005131)
chr3 (1-37)||(26996365-26996401)
chr3 (1-37)||(32421615-32421651)
chr3 (1-37)||(32767725-32767761)
chr3 (1-37)||(33375909-33375945)
chr3 (1-37)||(37927191-37927227)
chr3 (1-37)||(44677470-44677506)
chr3 (36-76)||(46852047-46852087)
chr3 (1-37)||(49761356-49761392)
chr3 (36-80)||(49761423-49761467)
[»] scaffold0204 (1 HSPs)
scaffold0204 (1-35)||(23125-23159)


Alignment Details
Target: chr1 (Bit Score: 148; Significance: 4e-78; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 79 - 243
Target Start/End: Original strand, 8447940 - 8448100
Alignment:
Q  79 aacaattattttttcatatatcctcagagaatctatactacttaaaaagaaatttacaacaagcacaccccaacccaaattctaagaatctcctaaagga 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8447940 aacaattattttttcatatatcctcagagaatctatactacttaaaaagaaatttacaacaagcacaccccaacccaaattctaagaatctcctaaagga 8448039  T
Q  179 caatgaatcacctccatgcatgctgctcttcttcacccaatacatcagttgactaagatattctt 243  Q
    ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||    
T  8448040 caatgaatcacctc----catgctgctcttcttcacccaatacatcagttgactaagatattctt 8448100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 8447852 - 8447896
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  8447852 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 8447896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 33358113 - 33358073
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  33358113 ctttttctttgtaaattatggttgtcacataagttgtcaac 33358073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 45383923 - 45383880
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||||||||||||||| |  ||||||||||||||||||    
T  45383923 tttttctttgtaaattatgattatttcataagttatcaactaaa 45383880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 36494567 - 36494601
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagtt 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  36494567 ctttttctttgtaaattatgattgtcaaataagtt 36494601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 36673687 - 36673649
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatca 74  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  36673687 ctttttctttgtaaattatggttgtcaaataagttatca 36673649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 38713619 - 38713657
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctcttt 39  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  38713619 tctctctcatattcatattattttttactttatctcttt 38713657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 4469382 - 4469330
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaactaaacaattattt 89  Q
    |||||||||||||||||||||||||  ||| ||| ||||| ||| ||||||||    
T  4469382 tttttctttgtaaattatgattgtcttatacgttgtcaaccaaataattattt 4469330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 8200191 - 8200231
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| ||||| |||||||| |||||    
T  8200191 ctttttctttgtaaattatggttgtcccataagttgtcaac 8200231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8411740 - 8411704
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  8411740 tctctctcatactcacattattttttactttatctct 8411704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8447785 - 8447821
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||| ||| |||||||||||||||||||||||||    
T  8447785 tctctcttatactcacatcattttttactttatctct 8447821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9008274 - 9008310
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  9008274 tctctctcatactcacattattttttactttatctct 9008310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 10890001 - 10889961
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  10890001 ctttttctttgtaaattatggttgtcacaaaagttgtcaac 10889961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21486339 - 21486303
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  21486339 tctctctcatactcacattattttttactttatctct 21486303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 29147829 - 29147789
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||| |||||||||||||| ||||||||||| ||||||||    
T  29147829 cttttcctttgtaaattatggttgtcacataaattatcaac 29147789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29586042 - 29586078
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  29586042 tctctctcatactcacattattttttactttatctct 29586078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33054110 - 33054074
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  33054110 tctctctcatactcacattattttttactttatctct 33054074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34040522 - 34040486
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  34040522 tctctctcatactcacattattttttactttatctct 34040486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44632577 - 44632613
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  44632577 tctctctcatactcacattattttttactttatctct 44632613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44789165 - 44789129
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  44789165 tctctttcatactcacatcattttttactttatctct 44789129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47214257 - 47214293
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  47214257 tctctctcatactcacattattttttactttatctct 47214293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 47721462 - 47721494
Alignment:
Q  5 tctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||| ||||||||||||||||||    
T  47721462 tctcatattcacattattttttactttatctct 47721494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 47721525 - 47721569
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||    
T  47721525 ctttttctttgtaaattatggttgtcccataagttgtccactaaa 47721569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 47728454 - 47728486
Alignment:
Q  5 tctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||| ||||||||||||||||||    
T  47728454 tctcatattcacattattttttactttatctct 47728486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 47728517 - 47728561
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||||||||||||| ||||| |||||||| || ||||||    
T  47728517 ctttttctttgtaaattatggttgtcccataagttgtccactaaa 47728561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48220166 - 48220130
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  48220166 tctctctcatactcacattattttttactttatctct 48220130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 50882132 - 50882096
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  50882132 tctctctcatatttacattattttttactttatctct 50882096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 52362531 - 52362567
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  52362531 tctctctcatactcacattattttttactttatctct 52362567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 11080 - 11120
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  11080 ctttttctttgtaaattatgattgtcacataagttgtcaac 11120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11013 - 11049
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  11013 tctctctcatactcacattattttttactttatctct 11049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 30439460 - 30439421
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  30439460 tttttctttgtaaattatggttgtcacataagttatcaac 30439421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 12367003 - 12366959
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||| ||||||||| |||||| |||||||||||||||||    
T  12367003 ctttttctttataaattatggttgtcagataagttatcaactaaa 12366959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18651419 - 18651455
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  18651419 tctctctcatactcacatcattttttactttatctct 18651455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 42110138 - 42110098
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  42110138 ctttttctttgtaaattatgatcgtcacataagttgtcaac 42110098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 8645281 - 8645320
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  8645281 tttttctttgtaaaatatgattatcacataagttatcaac 8645320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 31597064 - 31597103
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaa 75  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  31597064 ctttttctttgtaaattatgattgtctcaaaagttatcaa 31597103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 14707298 - 14707264
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagtt 70  Q
    |||||||||||||||||||||||||| ||||||||    
T  14707298 ctttttctttgtaaattatgattgtctcataagtt 14707264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 30136037 - 30135999
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctcttt 39  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  30136037 tctctctcatattcacattactttttactttatctcttt 30135999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 40739932 - 40739898
Alignment:
Q  3 tctctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||||| ||||||||||||||||||    
T  40739932 tctctcatattcacattattttttactttatctct 40739898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 42569751 - 42569713
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctcttt 39  Q
    |||||||||||||||||| | ||||||||||||||||||    
T  42569751 tctctctcatattcacattactttttactttatctcttt 42569713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1633912 - 1633876
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  1633912 tctctctcatactcacattattttttactttatctct 1633876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6991830 - 6991794
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  6991830 tctctctcatactcacattattttttactttatctct 6991794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 7478895 - 7478935
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||||||||||| ||| ||| |||||    
T  7478895 ctttttctttgtaaattatgattgtcaaataggttgtcaac 7478935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9549221 - 9549185
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  9549221 tctctctcatactcacattattttttactttatctct 9549185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11017854 - 11017890
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  11017854 tctctctcatactcacattattttttactttatctct 11017890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29991461 - 29991497
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  29991461 tctctttcatactcacatcattttttactttatctct 29991497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30439528 - 30439492
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  30439528 tctctctcatactcacattattttttactttatctct 30439492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33589252 - 33589216
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  33589252 tctctctcatactcacattattttttactttatctct 33589216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34718164 - 34718200
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  34718164 tctctctcatactcacattattttttactttatctct 34718200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38234056 - 38234092
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  38234056 tctctctcatactcacataattttttactttatctct 38234092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41159911 - 41159875
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  41159911 tctctctcatactcacattattttttactttatctct 41159875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45529268 - 45529232
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  45529268 tctctctcatactcacattattttttactttatctct 45529232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 12799831 - 12799864
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagtt 70  Q
    ||||||||||||||||||||||||||||||||||    
T  12799831 tttttctttgtaaattatgattgtcacataagtt 12799864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 21172396 - 21172440
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    ||||||||||||||||||||||| || ||||| ||||||||||||    
T  21172396 ctttttctttgtaaattatgattatcccataaattatcaactaaa 21172440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31076103 - 31076139
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  31076103 tctctctcatactcacatcattttttactttatctct 31076139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 43769827 - 43769867
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| ||||| ||||||||||||||    
T  43769827 ctttttctttgtaaattatggttgtcgcataagttatcaac 43769867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 12138969 - 12139008
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaa 75  Q
    |||||||||||||||||||| |||| ||||||||||||||    
T  12138969 ctttttctttgtaaattatggttgttacataagttatcaa 12139008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 39344934 - 39344895
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||||||||| || |||||||||||    
T  39344934 tttttctttgtaaattatgattgtctcaaaagttatcaac 39344895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 53299304 - 53299347
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    ||||||||||||||| ||| |||||| |||||||||||||||||    
T  53299304 tttttctttgtaaatcatgcttgtcatataagttatcaactaaa 53299347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 17475992 - 17476026
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagtt 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  17475992 ctttttctttgtaaattatgattgtcaaataagtt 17476026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 32696230 - 32696268
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctcttt 39  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  32696230 tctctctcatattcacattgttttttactttatctcttt 32696268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 43769760 - 43769798
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctcttt 39  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  43769760 tctctctcatactcacattattttttactttatctcttt 43769798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 48335603 - 48335637
Alignment:
Q  1 tctctctcatattcacatcattttttactttatct 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  48335603 tctctctcatattcacattattttttactttatct 48335637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 42959389 - 42959426
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatca 74  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  42959389 tttttctttgtaaaatatgattgtcaaataagttatca 42959426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 1815956 - 1815916
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||||  ||||||||||||| |||||    
T  1815956 ctttttctttgtaaattatggctgtcacataagttgtcaac 1815916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 4949621 - 4949665
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||||||||||||  ||||| |||||||| |||||||||    
T  4949621 ctttttctttgtaaattatagttgtcgcataagttgtcaactaaa 4949665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9118886 - 9118850
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  9118886 tctctctcataatcacattattttttactttatctct 9118850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 9362634 - 9362590
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||| |||| |||| |||||||| |||||||||||||||    
T  9362634 ctttttctttataaactatggttgtcacaaaagttatcaactaaa 9362590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12112676 - 12112712
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||||||| || ||||||||||||||||||    
T  12112676 tctctctcatattcatattattttttactttatctct 12112712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 13263352 - 13263308
Alignment:
Q  37 tttttctttgtaaattatgattgt-cacataagttatcaactaaa 80  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||    
T  13263352 tttttctttgcaaattatgattgtccccataagttatcaactaaa 13263308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21617232 - 21617268
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  21617232 tctctctcatactcacattattttttactttatctct 21617268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26206999 - 26206963
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||||||| | ||||||||||||||||    
T  26206999 tctctctcatattcacattactttttactttatctct 26206963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 26718484 - 26718524
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  26718484 ctttttctttgtaaattatgattgtcccaaaaattatcaac 26718524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 26731112 - 26731152
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||||||||| || || ||||||||    
T  26731112 ctttttctttgtaaattatgattgtcccaaaaattatcaac 26731152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28458399 - 28458363
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  28458399 tctctctcatactcacattattttttactttatctct 28458363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28657463 - 28657427
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  28657463 tctctctcatactcacattattttttactttatctct 28657427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30079895 - 30079931
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  30079895 tctctctcatactcacattattttttactttatctct 30079931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30170042 - 30170006
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  30170042 tctctctcatactcacattattttttactttatctct 30170006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45143693 - 45143657
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  45143693 tctctctcataatcacattattttttactttatctct 45143657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45152462 - 45152426
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  45152462 tctctctcataatcacattattttttactttatctct 45152426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 45851815 - 45851847
Alignment:
Q  7 tcatattcacatcattttttactttatctcttt 39  Q
    ||||| |||||||||||||||||||||||||||    
T  45851815 tcatactcacatcattttttactttatctcttt 45851847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 7648504 - 7648545
Alignment:
Q  35 tctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||||||||||  ||||||||||||||    
T  7648504 tctttttctttgtaaattatgattgttgcataagttatcaac 7648545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 433899 - 433935
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  433899 tctctctcatactcacatcattttttactttatctct 433935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 9377572 - 9377616
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    ||||||||||||||||||||| |||| |||||||| |||||||||    
T  9377572 ctttttctttgtaaattatgactgtctcataagttgtcaactaaa 9377616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 36212015 - 36211975
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  36212015 ctttttctttataaattatgattgtcacataatttatcaac 36211975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 1836130 - 1836173
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||    
T  1836130 tttttctttgtaaattatggttgtctcataatttatcaactaaa 1836173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 12498591 - 12498549
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    ||||||||||||||||||||||||||||||| || |||||||||    
T  12498591 tttttctttgtaaattatgattgtcacataa-ttgtcaactaaa 12498549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 15245714 - 15245675
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaa 75  Q
    |||||||||||||||||||||||||| |||||||| ||||    
T  15245714 ctttttctttgtaaattatgattgtctcataagttgtcaa 15245675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 36517312 - 36517351
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaa 75  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  36517312 ctttttctttgtaaattatgattgtcccaaaagttatcaa 36517351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 39
Target Start/End: Original strand, 6941000 - 6941030
Alignment:
Q  9 atattcacatcattttttactttatctcttt 39  Q
    |||||||||||||||||||||||||||||||    
T  6941000 atattcacatcattttttactttatctcttt 6941030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 75
Target Start/End: Complemental strand, 11167472 - 11167434
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaa 75  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  11167472 tttttctttgtaaattatggttgttacataagttatcaa 11167434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 18723643 - 18723681
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctcttt 39  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  18723643 tctctctcatactcacattattttttactttatctcttt 18723681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 42866866 - 42866900
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagtt 70  Q
    |||||||||||||||||||||||||||| ||||||    
T  42866866 ctttttctttgtaaattatgattgtcacgtaagtt 42866900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23352927 - 23352882
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctctttttctttg 46  Q
    ||||||||||| |||||| |||||||||||||||||| || |||||    
T  23352927 tctctctcatactcacattattttttactttatctctattgctttg 23352882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 5054724 - 5054764
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||  |||||||||||||| |||||    
T  5054724 ctttttctttgtaaattattgttgtcacataagttgtcaac 5054764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9377505 - 9377541
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||||||| | ||||||||||||||||    
T  9377505 tctctctcatattcacattactttttactttatctct 9377541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 23352862 - 23352822
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| ||||| |||||||| |||||    
T  23352862 ctttttctttgtaaattatggttgtcccataagttgtcaac 23352822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25881593 - 25881629
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  25881593 tctctctcatactcacattattttttactttatctct 25881629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26206896 - 26206932
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  26206896 tctctctcatactcacattattttttactttatctct 26206932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28245777 - 28245813
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  28245777 tctctctcatactcacattattttttactttatctct 28245813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 34119607 - 34119567
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||||| |||| |||||||| |||||    
T  34119607 ctttttctttgtaaattatgagtgtctcataagttgtcaac 34119567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34119674 - 34119638
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  34119674 tctctctcatactcacattattttttactttatctct 34119638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 34431784 - 34431744
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||| ||||| ||||||| ||||||||||||    
T  34431784 ctttttctttgtaagttatggttgtcacgtaagttatcaac 34431744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 35589342 - 35589298
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||||||||||||| ||||| || || ||||||||||||    
T  35589342 ctttttctttgtaaattatggttgtcccaaaaattatcaactaaa 35589298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36802945 - 36802981
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  36802945 tctctctcatactcacattattttttactttatctct 36802981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 37105754 - 37105794
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  37105754 ctttttctttgtaaattatggttgtcacaaaagttgtcaac 37105794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39449139 - 39449103
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  39449139 tctctttcatactcacatcattttttactttatctct 39449103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 40937019 - 40936975
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||||||||||||| ||||||||||| || ||| |||||    
T  40937019 ctttttctttgtaaattatggttgtcacataaattgtcagctaaa 40936975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 40937086 - 40937050
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  40937086 tctctctcatactcacattattttttactttatctct 40937050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42678798 - 42678834
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  42678798 tctctctcatactcacattattttttactttatctct 42678834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3293178 - 3293214
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  3293178 tctctctcatattcacataattttttactttatctct 3293214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 7817752 - 7817792
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  7817752 ctttttctttgtaaattatggttgtcacataagttgtcaac 7817792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 47500725 - 47500761
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatc 73  Q
    ||||||||||||||||||||||||| |||||||||||    
T  47500725 tttttctttgtaaattatgattgtcgcataagttatc 47500761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Original strand, 4713690 - 4713729
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||| |||||||||||||| |||||    
T  4713690 tttttctttgtaaattatggttgtcacataagttgtcaac 4713729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 16980413 - 16980456
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    ||||||||||||||||||||||||| || ||||| |||||||||    
T  16980413 tttttctttgtaaattatgattgtctcaaaagttgtcaactaaa 16980456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3343352 - 3343316
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||||||| | ||||||||||||||||    
T  3343352 tctctctcatattcacattactttttactttatctct 3343316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4713622 - 4713658
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||| |||||||| ||||||||||||||||||    
T  4713622 tctctctcaaattcacattattttttactttatctct 4713658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11564942 - 11564978
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  11564942 tctctctcatactcacattattttttactttatctct 11564978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21023139 - 21023103
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  21023139 tctctttcatattcacattattttttactttatctct 21023103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33180732 - 33180696
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  33180732 tctctctcatactcacattattttttactttatctct 33180696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35452595 - 35452559
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  35452595 tctctctcatactcacataattttttactttatctct 35452559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39231750 - 39231714
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  39231750 tctctctcatactcacattattttttactttatctct 39231714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 42926255 - 42926295
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| ||||||||||| || |||||    
T  42926255 ctttttctttgtaaattatggttgtcacataaattgtcaac 42926295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43573565 - 43573529
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||||||| | ||||||||||||||||    
T  43573565 tctctctcatattcacattactttttactttatctct 43573529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47078273 - 47078237
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  47078273 tctctctcatactcacattattttttactttatctct 47078237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22341196 - 22341160
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  22341196 tctctctcatactcacatcattttttactttatctct 22341160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26832695 - 26832731
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||||||||||||||||||||||    
T  26832695 tctctctcatactcacatcattttttactttatctct 26832731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Original strand, 335178 - 335211
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagtt 70  Q
    |||||||||||||||||||||||||| |||||||    
T  335178 tttttctttgtaaattatgattgtcaaataagtt 335211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15318210 - 15318173
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctctt 38  Q
    |||||||||||||||||| ||| |||||||||||||||    
T  15318210 tctctctcatattcacattattatttactttatctctt 15318173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 868974 - 868938
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||||||| || ||||||||||||||||||    
T  868974 tctctctcatattcatattattttttactttatctct 868938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2075473 - 2075437
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  2075473 tctctctcatactcacattattttttactttatctct 2075437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4820300 - 4820336
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  4820300 tctctctcatactcacattattttttactttatctct 4820336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 5028221 - 5028181
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||| ||||||||| ||||| ||||||||||||||    
T  5028221 ctttttctttataaattatggttgtctcataagttatcaac 5028181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 6531135 - 6531095
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| ||||| ||| ||||||||||    
T  6531135 ctttttctttgtaaattatggttgtcccattagttatcaac 6531095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6531205 - 6531169
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  6531205 tctctctcatactcacattattttttactttatctct 6531169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11547551 - 11547515
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  11547551 tctctctcatactcacattattttttactttatctct 11547515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30036816 - 30036780
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  30036816 tctctctcataatcacataattttttactttatctct 30036780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30152552 - 30152516
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  30152552 tctctctcatactcacataattttttactttatctct 30152516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32046747 - 32046783
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  32046747 tctctctcatactcacattattttttactttatctct 32046783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33421809 - 33421845
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||| ||||| |||||||||||||||||||||||||    
T  33421809 tctctttcatactcacatcattttttactttatctct 33421845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 35213516 - 35213476
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  35213516 ctttttctttgtaaattatgattgtcccaaaagttgtcaac 35213476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 3640152 - 3640108
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||| ||||||||| |||||||||||||| |||||||||    
T  3640152 ctttttctttataaattatggttgtcacataagttgtcaactaaa 3640108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 15953000 - 15952960
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  15953000 ctttttctttgtaaattatggttgtcacataagttgtcaac 15952960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 41175661 - 41175621
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  41175661 ctttttctttgtaaattatggttgtcacataagttgtcaac 41175621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 4430956 - 4430922
Alignment:
Q  3 tctctcatattcacatcattttttactttatctct 37  Q
    ||||||||| |||||||||||||||||||||||||    
T  4430956 tctctcatactcacatcattttttactttatctct 4430922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 70
Target Start/End: Complemental strand, 35098959 - 35098926
Alignment:
Q  37 tttttctttgtaaattatgattgtcacataagtt 70  Q
    |||||||||||||||||||||||||| |||||||    
T  35098959 tttttctttgtaaattatgattgtcaaataagtt 35098926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8267842 - 8267806
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  8267842 tctctctcatactcacattattttttactttatctct 8267806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 9226416 - 9226456
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    ||||||||||||||||||| ||||||||| ||||| |||||    
T  9226416 ctttttctttgtaaattataattgtcacaaaagttgtcaac 9226456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 10649551 - 10649591
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  10649551 ctttttctttgtaaattatggttgtcacaaaagttgtcaac 10649591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15267833 - 15267869
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||||||| || ||||||||||||||||||    
T  15267833 tctctctcatattcatattattttttactttatctct 15267869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15478707 - 15478743
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  15478707 tctctctcatactcacattattttttactttatctct 15478743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18842343 - 18842307
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  18842343 tctctctcatactcacattattttttactttatctct 18842307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20770180 - 20770216
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  20770180 tctctctcatactcacattattttttactttatctct 20770216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30640839 - 30640875
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||||| |||| ||||||||||||||||||    
T  30640839 tctctctcatatttacattattttttactttatctct 30640875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35099027 - 35098991
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  35099027 tctctctcatactcacattattttttactttatctct 35098991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41175728 - 41175692
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  41175728 tctctctcatactcacattattttttactttatctct 41175692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 9158828 - 9158788
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||| |||||||||||||| |||||    
T  9158828 ctttttctttgtaaattatggttgtcacataagttgtcaac 9158788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 80
Target Start/End: Complemental strand, 33795680 - 33795636
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||||||||||||| ||||||| |||||| |||||||||    
T  33795680 ctttttctttgtaaattatggttgtcacgtaagttgtcaactaaa 33795636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 35201495 - 35201461
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagtt 70  Q
    ||||||||||||||||||||||||||| |||||||    
T  35201495 ctttttctttgtaaattatgattgtcaaataagtt 35201461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 80
Target Start/End: Original strand, 51343526 - 51343568
Alignment:
Q  38 ttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    ||||||||||||||||| | ||||||||||||| |||||||||    
T  51343526 ttttctttgtaaattataaatgtcacataagttgtcaactaaa 51343568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8821679 - 8821715
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  8821679 tctctctcatactcacattattttttactttatctct 8821715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8846540 - 8846576
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  8846540 tctctctcatactcacattattttttactttatctct 8846576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11633662 - 11633698
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    |||||||||||||||||| | ||||||||||||||||    
T  11633662 tctctctcatattcacattactttttactttatctct 11633698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 21005131 - 21005091
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||| ||||||||||||||| || |||||||||||    
T  21005131 ctttttctttataaattatgattgtcccaaaagttatcaac 21005091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26996365 - 26996401
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  26996365 tctctctcatactcacattattttttactttatctct 26996401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 32421651 - 32421615
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  32421651 tctctctcatactcatatcattttttactttatctct 32421615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32767725 - 32767761
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  32767725 tctctctcatactcacattattttttactttatctct 32767761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33375909 - 33375945
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  33375909 tctctctcatactcacattattttttactttatctct 33375945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37927227 - 37927191
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  37927227 tctctctcatactcacataattttttactttatctct 37927191  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44677506 - 44677470
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  44677506 tctctctcatactcacattattttttactttatctct 44677470  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 46852087 - 46852047
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaac 76  Q
    |||||||||||||||||||||||||| || ||||| |||||    
T  46852087 ctttttctttgtaaattatgattgtcccaaaagttgtcaac 46852047  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49761356 - 49761392
Alignment:
Q  1 tctctctcatattcacatcattttttactttatctct 37  Q
    ||||||||||| |||||| ||||||||||||||||||    
T  49761356 tctctctcatactcacattattttttactttatctct 49761392  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 49761423 - 49761467
Alignment:
Q  36 ctttttctttgtaaattatgattgtcacataagttatcaactaaa 80  Q
    |||||||||| ||||||||||||||||  |||||| |||||||||    
T  49761423 ctttttctttataaattatgattgtcatgtaagttgtcaactaaa 49761467  T

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Target: scaffold0204 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23125 - 23159
Alignment:
Q  1 tctctctcatattcacatcattttttactttatct 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  23125 tctctctcatattcacattattttttactttatct 23159  T

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