View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_33 (Length: 306)
Name: NF0738_low_33
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_33 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 172 - 304
Target Start/End: Complemental strand, 46141955 - 46141823
Alignment:
| Q |
172 |
ttccattcttttgtttaatatccaaacaatggaatataatgtcattccatcacataccattccattctatccaatactaccaatccaaacaaagcctaaa |
271 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46141955 |
ttccattcttttgtttaatatccaaacaatggaatataatgtcattccatcacataccattccattctatccaatactaccaatccaaacaaaggctaaa |
46141856 |
T |
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| Q |
272 |
tgttggaggtggtaaaggtttggtcaagaaatc |
304 |
Q |
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| T |
46141855 |
ttttggaggtggtaaaggtttggtcaagaaatc |
46141823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 29011556 - 29011499
Alignment:
| Q |
164 |
ccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattccat |
221 |
Q |
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| T |
29011556 |
ccatcccattccattcatttttttaaaattcaaacaatggaatatcattccattccat |
29011499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 164 - 270
Target Start/End: Complemental strand, 13105870 - 13105764
Alignment:
| Q |
164 |
ccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattccatcacataccattccattctatccaatactaccaatccaaacaa |
263 |
Q |
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| T |
13105870 |
ccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattccatcacatatcattccattccatgcaatattactaatccaaacaa |
13105771 |
T |
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| Q |
264 |
agcctaa |
270 |
Q |
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| T |
13105770 |
agcctaa |
13105764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 164 - 268
Target Start/End: Complemental strand, 51194150 - 51194046
Alignment:
| Q |
164 |
ccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattccatcacataccattccattctatccaatactaccaatccaaacaa |
263 |
Q |
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|||||||||| |||| |||| || |||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||| ||| |||||||||| |
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| T |
51194150 |
ccatcccatttcattatttttttaaatatccaaacaatggaacataatgtcattccatcacatagcactccattccatccaataccaccgatccaaacaa |
51194051 |
T |
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| Q |
264 |
agcct |
268 |
Q |
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||||| |
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| T |
51194050 |
agcct |
51194046 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 22473744 - 22473799
Alignment:
| Q |
164 |
ccatcccattccattcttttgtttaatatccaaacaatgga--atataatgtcatt |
217 |
Q |
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| T |
22473744 |
ccatctcattccattcttttgtttaatatccaaacaatggaacatataatgtcatt |
22473799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 238
Target Start/End: Complemental strand, 27868145 - 27868071
Alignment:
| Q |
164 |
ccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattccatcacataccattccattc |
238 |
Q |
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| T |
27868145 |
ccatcccattccatccatttttaaaaaatccaaacaatggaatatcaattcattccatcccattccattccattc |
27868071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 8851144 - 8851061
Alignment:
| Q |
185 |
tttaatatccaaacaatggaatataatgtcattccatcacataccattccattctatccaatactaccaatccaaacaaagcct |
268 |
Q |
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||||| |||||||||||||||||| || |||||||||||||| ||||||||||| ||| | || || |||||||||| ||||| |
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| T |
8851144 |
tttaaaatccaaacaatggaatatcatttcattccatcacattccattccattccatctcaaaccactaatccaaacagagcct |
8851061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 12461 - 12519
Alignment:
| Q |
164 |
ccatcccattccattcttttgtttaatatccaaacaatggaatataatgtcattccatc |
222 |
Q |
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||||| |||||||||||||| || ||||||||||||| |||| |||||||||||||||| |
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| T |
12461 |
ccatcacattccattctttttttaaatatccaaacaaaggaacataatgtcattccatc |
12519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 271
Target Start/End: Original strand, 20029749 - 20029829
Alignment:
| Q |
191 |
atccaaacaatggaatataatgtcattccatcacataccattccattctatccaatactaccaatccaaacaaagcctaaa |
271 |
Q |
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|||||||||||| ||||| || ||||| ||| ||| ||||||||||| |||| | || || |||||||||| |||||||| |
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| T |
20029749 |
atccaaacaatgaaatatcatcccattcgatcccatcccattccattccatcccaaaccactaatccaaacagagcctaaa |
20029829 |
T |
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