View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0738_low_38 (Length: 284)
Name: NF0738_low_38
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_38 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 41 - 224
Target Start/End: Original strand, 38215896 - 38216079
Alignment:
| Q |
41 |
cagaaaagaagttgttagaagcagcaatagcaaattgggttttgggttccaaaacactctgaacaagttgctttttctcctccttcaacttggaaacgaa |
140 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
38215896 |
cagaaaagaagttgttagaagcagcaatagcaaattgggttttgggttccaaaacactctgaacaagttgccttttctcctccttcaacttggaaacgaa |
38215995 |
T |
|
| Q |
141 |
tagtgaataacaagaagacatgttaatctcccatgtttctacagcagcagcaccaccagcattttttaaactcttgactcttct |
224 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215996 |
tagtgaataacaagaagacatgttgatctcccatgtttctacagcagcagcaccaccagcattttttaaactcttgactcttct |
38216079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5809 times since January 2019
Visitors: 4859