View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_47 (Length: 274)
Name: NF0738_low_47
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_47 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 39 - 274
Target Start/End: Original strand, 31395680 - 31395915
Alignment:
| Q |
39 |
attgaatggttaaagcaatatatgctgaaatgagaatcataaaggttacaaaaagatggagtgtaaataaaattatataggcttaaaagtaagatataat |
138 |
Q |
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| T |
31395680 |
attgaatggttaaagcaatatatgctgaaatgagaatcataaaagttacaaaaagatgaagtgtaaataaaattatataggcttaaaaataagatataat |
31395779 |
T |
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| Q |
139 |
tttcaatttaactatatatgttggcagatacattgatgattagtacaaattggtttgagtaatttcaatggaaaggtacacaaagaagaaggacaattaa |
238 |
Q |
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| T |
31395780 |
tttcaatttaactatatatgttggcagatacattgatgattagtacaaattggtttgagtaatttcaatggaaaggtacacaaagaagaaggacaattaa |
31395879 |
T |
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| Q |
239 |
agtcagtattacagggggtaatttcttctctttctc |
274 |
Q |
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| T |
31395880 |
agtcagtattacaaggggtaatttcttctctttctc |
31395915 |
T |
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