View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0738_low_48 (Length: 272)

Name: NF0738_low_48
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0738_low_48
NF0738_low_48
[»] chr5 (3 HSPs)
chr5 (29-272)||(1407274-1407517)
chr5 (56-272)||(1363907-1364121)
chr5 (77-272)||(1369455-1369656)


Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 1407274 - 1407517
Alignment:
Q  29 cgaataatatggactaaagaaagagagatcaaacatcatgattgtaaatagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtcc 128  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1407274 cgaataaagtggactaaagaaagagagatcaaacatcatgattgtaaatagtaagagattagaaaatacatgtagtaaatgttgaattttttctctgtcc 1407373  T
Q  129 aactcctttttgttttcttcagcgagcaacgagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |    
T  1407374 aactcctttttgttttcttcagcgagcaacgagtctaacatatcgttgttggcgacaaaaccatccccttctcgcaatttcaacttttgatcgattatgt 1407473  T
Q  229 tgtcaaagataccaaacaactttcctacataaaacacataggtc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1407474 tgtcaaagataccaaacaactttcctacataaaacacataggtc 1407517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 56 - 272
Target Start/End: Complemental strand, 1364121 - 1363907
Alignment:
Q  56 atcaaacatcatgattgtaaatagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcagcgagc 155  Q
    |||||||||||| ||||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1364121 atcaaacatcataattgtaaatagtaaga--ttagaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcagcgagc 1364024  T
Q  156 aacgagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaagataccaaacaactttccta 255  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1364023 aaggagtctaacatatcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatgttgtcaaagataccaaacaactttccta 1363924  T
Q  256 cataaaacacataggtc 272  Q
    |||||||||||||||||    
T  1363923 cataaaacacataggtc 1363907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 77 - 272
Target Start/End: Complemental strand, 1369656 - 1369455
Alignment:
Q  77 tagtaagagatttgaaaatacatgtagtaaatgttgaattttttctctgtccaactcctttttgttttcttcag------cgagcaacgagtctaacata 170  Q
    ||||||| |||| ||||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||||      ||||||| ||||||| |||     
T  1369656 tagtaagggattagaaaatacatgtaataaatgttcaattttttctctatccaactcctttctgttttcttcaggaatgtcgagcaaggagtctagcatg 1369557  T
Q  171 tcgttgttggtgacaaaaccatccccttctcgcaatttcaacttttgatcgattatattgtcaaagataccaaacaactttcctacataaaacacatagg 270  Q
    ||||||||||||| |||||||||| |||||||||| |||||| |||| |||||||| ||||| |||| |   ||||||||||| | |||||||| |||||    
T  1369556 tcgttgttggtgaaaaaaccatcctcttctcgcaacttcaacctttggtcgattatgttgtcgaagacattgaacaactttccaatataaaacatatagg 1369457  T
Q  271 tc 272  Q
    ||    
T  1369456 tc 1369455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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