View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_5 (Length: 551)
Name: NF0738_low_5
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Original strand, 2947167 - 2947690
Alignment:
| Q |
1 |
cagctgggggacacaccatgattgcccatcctgctggtatggtatatcctgcacgtgttcattattgaagacaaaatgaggtcacattgtcaaatatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2947167 |
cagctgggggacacaccatgattgcccatcctgctggtatggtatatcctgcacgtgttcattattgaagacaaaatgaggtcacattgtcaaatatagt |
2947266 |
T |
|
| Q |
101 |
gtgcttttccactattacttaaacatcaagttaccaatgcacttgaacattgaaatttgaaaatgttgtattattaaattagcaatcacatacccttaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2947267 |
gtgcttttccactattacttaaacatcaagttaccaatgcacttgaacattgaaatttgaaaattttgtattattaaattagcaatcacatacccttaaa |
2947366 |
T |
|
| Q |
201 |
attaatttcccttagtgccttccggaagattcctggaactatatttgcaagtcttgcagtttcagttatgagctgtgcaaatcatcattcattgaatttc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2947367 |
attaatttcccttagtgccttccggaagattcctggaactatatttgcaagtcttgcagtttcggttatgagctgtgcaaatcatcattcattgaatttc |
2947466 |
T |
|
| Q |
301 |
aaataagataaattaacacacaatgtgccacattaaaaatgaagaaannnnnnnaactaacctgaaatgtaaatgtcattgatttatattcttgccatgt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2947467 |
aaataagataaattaacacacaatgtgccacattaaaaatgaagaaatttttttaactaacctgaaatgtaaatgtcattgatttatattcttgccatgt |
2947566 |
T |
|
| Q |
401 |
gactcctgagttaggattctcacgtcgttcaaggatggcttcatgttcttcctaaaagacaaagtaccgaggaagtcaaaatcgacgtcgtaaagcaatn |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2947567 |
gactcctgagttaggattctcacgtcgttcaaggatggcttcatgttcttcctaaaagacaaagtaccgaggaagtcaaaatcgacgtcgtaaagcaata |
2947666 |
T |
|
| Q |
501 |
nnnnnntagttcaaaagattctga |
524 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
2947667 |
aaaaaatagttcaaaagattctga |
2947690 |
T |
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