View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_54 (Length: 268)
Name: NF0738_low_54
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_54 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 29 - 238
Target Start/End: Original strand, 560766 - 560975
Alignment:
| Q |
29 |
cagagacaacttaagcatccggttttgttcttccttagctttttctcaatgtcaatttcaggacaagaagggcgattcaatttgacctataatgaaaaaa |
128 |
Q |
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| T |
560766 |
cagagacaacttaagcatccggttttgttcttccttagctttttctcaatgtcaatttcaggacaagaagggcgattcaatttgacctataatgaaaaaa |
560865 |
T |
|
| Q |
129 |
cagtcgtgttatttcaacatcaaaatacatacacgatgtgatataacttaaacagagcaaaaatttagataaaccataagtacctgcattttactttcac |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
560866 |
cagtcgtgttatttcaacatcaaaatacatacacgatgtgatataacttaaacagagcaaaaatttagataaaccataagtacctgcattttactttcac |
560965 |
T |
|
| Q |
229 |
atttcaatct |
238 |
Q |
| |
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|||||||||| |
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| T |
560966 |
atttcaatct |
560975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 8580881 - 8580770
Alignment:
| Q |
53 |
ttgttcttccttagctttttctcaatgtcaatttcaggacaagaagggcgattcaatttgacctataatgaaaaaacagtcgtgt--tatttcaacatca |
150 |
Q |
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| T |
8580881 |
ttgttcttccttagctttctttcaatgtcaattttcggacaagaagggtgactgaatttaacctataataaaaaaacagtcatgttatattttaacatca |
8580782 |
T |
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| Q |
151 |
aaatacatacac |
162 |
Q |
| |
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| T |
8580781 |
aaatacaaacac |
8580770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 162
Target Start/End: Complemental strand, 8576919 - 8576849
Alignment:
| Q |
91 |
acaagaagggcgattcaatttgacctataatgaaaaaacagtcgtgttatttcaacatcaaaatacatacac |
162 |
Q |
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||||||| || ||||||||||||||| ||| |||| |||| ||||||||||||||||||||||||||||| |
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| T |
8576919 |
acaagaaaggtgattcaatttgacctctaac-aaaatgcagttgtgttatttcaacatcaaaatacatacac |
8576849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 36224053 - 36224159
Alignment:
| Q |
55 |
gttcttccttagctttttctcaatgtcaatttcaggacaagaagggcgattcaatttgacctataatgaaaaaacagtcgtgttatttcaacatcaaaat |
154 |
Q |
| |
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|||||||||||||||| | |||| |||||||| || |||||||||| | ||| ||||||||| ||||||||||| |||||||||||||||||||| |
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| T |
36224053 |
gttcttccttagctttctttcaacgtcaattttagaacaagaagggttgctatgtttaacctataat-aaaaaacagtcatgttatttcaacatcaaaat |
36224151 |
T |
|
| Q |
155 |
acatacac |
162 |
Q |
| |
|
||| |||| |
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|
| T |
36224152 |
acaaacac |
36224159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 39427268 - 39427371
Alignment:
| Q |
53 |
ttgttcttccttagctttttctcaatgtcaatttcaggacaagaagggcgattcaatttgacctataatgaaaaaacagtcgtgttatttcaacatcaaa |
152 |
Q |
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|||| ||||||||||||| | | ||| ||||||| ||||||||| | || ||| ||| ||||||||| ||||| ||| ||||||||||||||||| | |
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|
| T |
39427268 |
ttgtacttccttagctttctttaaatttcaattttgggacaagaacagtgactcattttaacctataattaaaaa-cagctgtgttatttcaacatcata |
39427366 |
T |
|
| Q |
153 |
ataca |
157 |
Q |
| |
|
||||| |
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|
| T |
39427367 |
ataca |
39427371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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