View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_55 (Length: 267)
Name: NF0738_low_55
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_55 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 7e-92; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 89 - 267
Target Start/End: Complemental strand, 38711332 - 38711154
Alignment:
| Q |
89 |
catcatcatcacctttcgttgcaccggtacactccccagcaacgtctccagcatggattgctccgacaccaagtgctactagatggaatgctccttcacc |
188 |
Q |
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| T |
38711332 |
catcatcatcacctttcgttgcaccggtacactccccagcaacgtctccagcatggattgctccgacaccaagtgctactagatggaatgctccttcacc |
38711233 |
T |
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| Q |
189 |
aagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggcaggctccttcgccaagtgctacc |
267 |
Q |
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| T |
38711232 |
aagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggaaggctccttcaccaagtgctacc |
38711154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 38711054 - 38710959
Alignment:
| Q |
172 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggcaggctccttcgccaagtgctacc |
267 |
Q |
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| T |
38711054 |
tggagtgcttcttcaccaagtgctaccggttggactactccgacacactctccaacacaatcaccggcttggcatgctccttcaccaagtgctacc |
38710959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 172 - 267
Target Start/End: Complemental strand, 38711123 - 38711028
Alignment:
| Q |
172 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggcaggctccttcgccaagtgctacc |
267 |
Q |
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| T |
38711123 |
tggaatgctccttcaccaagtgctaccggctggactgctcccgcacactccccaacacaatcaccgacttggagtgcttcttcaccaagtgctacc |
38711028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 38710981 - 38710945
Alignment:
| Q |
176 |
atgctccttcaccaagtgctatcggttggaatgctcc |
212 |
Q |
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| T |
38710981 |
atgctccttcaccaagtgctaccggttggactgctcc |
38710945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 264
Target Start/End: Original strand, 39704971 - 39705063
Alignment:
| Q |
172 |
tggaatgctccttcaccaagtgctatcggttggaatgctccaacacactccccatcacaatcacctgcttggcaggctccttcgccaagtgct |
264 |
Q |
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| T |
39704971 |
tggaatgctccctcaccaagtgctattgtctggactgctccggcacactccccagtacaatcgccagcttggaatgctccctcgtcaagtgct |
39705063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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