View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_56 (Length: 263)
Name: NF0738_low_56
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_56 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 44048080 - 44047866
Alignment:
| Q |
1 |
ccagcctgtttcccaatcccaaagctttatgagcatatcatcagatgacgacagaacataaggaagggtgggatgaactgccacacatctaatgtaatct |
100 |
Q |
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| T |
44048080 |
ccagcctttttcccaatcccaaagctttatgagcatatcatcagatgacgacagaacataaggaagggtgggatgaactgccacacatctaatgtaatct |
44047981 |
T |
|
| Q |
101 |
gtatgtgcttcaaatactttgactttatccattgtgttgtaattatatacacgaataaacatatcatctgctccagcaacaacccactgtttgcgtgcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44047980 |
gtatgtgcttcaaatactttgactttatccattgtgttgtaattatatacacgaataaacatatcatctgctccagcaacaacccactgtttgcgtgcaa |
44047881 |
T |
|
| Q |
201 |
caaacttcgctgatc |
215 |
Q |
| |
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||||||||||||||| |
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| T |
44047880 |
caaacttcgctgatc |
44047866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 3142576 - 3142788
Alignment:
| Q |
1 |
ccagcctgtttcccaatcccaaagctttatgagcatatcatcagatgacgacagaacataaggaagggtgggatgaactgccacacatctaatgtaatct |
100 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||| |||||||| |||||||||||| |
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| T |
3142576 |
ccagcctttttcccaatcccaaagctttatgagcatatcatccgacgacgatagcacatagggaagggtgggatgaacagccacacacctaatgtaatct |
3142675 |
T |
|
| Q |
101 |
gtatgtgcttcaaatactttgactttatccattgtgttgtaattatatacacgaataaacatatcatctgctccagcaacaacccactgtttgcgtgcaa |
200 |
Q |
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| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3142676 |
gagtgtgcctcaaatactttaactttatccattgtgttgtaattatatacacgaataaacatatcatctgctcctgcaacaacccactgtttgcgtgcaa |
3142775 |
T |
|
| Q |
201 |
caaacttcgctga |
213 |
Q |
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|||||| ||||| |
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| T |
3142776 |
taaacttggctga |
3142788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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