View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_59 (Length: 259)
Name: NF0738_low_59
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_59 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 38 - 210
Target Start/End: Complemental strand, 20492572 - 20492400
Alignment:
| Q |
38 |
gaagtattccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtc |
137 |
Q |
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| T |
20492572 |
gaagtattccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctgataagaataaggtc |
20492473 |
T |
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| Q |
138 |
acaactcgagtaaactttgtcgaaattaaaactcgctgtttttcctccagaaacatttttaaaaagtgatatt |
210 |
Q |
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| T |
20492472 |
acaactcgagtaaactttgtcgaaattaaaactcgctgtttttcctccggaaacatttttaaaaagtgatatt |
20492400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 46 - 157
Target Start/End: Complemental strand, 1361779 - 1361668
Alignment:
| Q |
46 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtcacaactcg |
145 |
Q |
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| T |
1361779 |
ccaacaggaacgacaggaaccttgtactgttcagagatataatccaaccattcaccttcaagttctcttgaggttctgagaagaaaaagatcacaactcg |
1361680 |
T |
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| Q |
146 |
agtaaactttgt |
157 |
Q |
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| T |
1361679 |
aataagctttgt |
1361668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 38 - 158
Target Start/End: Complemental strand, 29954437 - 29954317
Alignment:
| Q |
38 |
gaagtattccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtc |
137 |
Q |
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| T |
29954437 |
gaagcattccaactggaaccacaggaactttgtattggtaagaaatataatctaaccattcaccttcaagttctctagaggttcttataagaaaaaggtc |
29954338 |
T |
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| Q |
138 |
acaactcgagtaaactttgtc |
158 |
Q |
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| T |
29954337 |
acaacttgagtatactttgtc |
29954317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 130
Target Start/End: Original strand, 51370023 - 51370108
Alignment:
| Q |
45 |
tccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaa |
130 |
Q |
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|||||| |||| |||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||| || ||||||||||| |
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| T |
51370023 |
tccaacaggaagcacaggaaccttgtatcggtgagaaagataatctaaccatggaccttcaagttctctagaggttctaataagaa |
51370108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 14588846 - 14588760
Alignment:
| Q |
52 |
ggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtca |
138 |
Q |
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| T |
14588846 |
ggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaaaggtca |
14588760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 138
Target Start/End: Complemental strand, 14622504 - 14622418
Alignment:
| Q |
52 |
ggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtca |
138 |
Q |
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||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||| || ||| | ||||| ||||||| |
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| T |
14622504 |
ggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaaaggtca |
14622418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 45 - 111
Target Start/End: Complemental strand, 11531744 - 11531678
Alignment:
| Q |
45 |
tccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttct |
111 |
Q |
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|||||||||||||||| ||||||| ||| | ||||||||||||||||||| ||||||||||||| |
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| T |
11531744 |
tccaactggaaccacacgaaccttatattggctagaaatataatctaaccattcaccttcaagttct |
11531678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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