View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0738_low_6 (Length: 539)
Name: NF0738_low_6
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 99 - 516
Target Start/End: Complemental strand, 18787559 - 18787141
Alignment:
| Q |
99 |
aaatgattcacaatatatacaatgatcccacatcaacccacatggagattcctataatagcctgtgactagttgtaagattcacaacactcttctttttt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18787559 |
aaatgattcacaatatatacaatgatcccacatctacccacatggagattcctataatagcctatgactagttgtaagattcacaacactcttcttttt- |
18787461 |
T |
|
| Q |
199 |
gagtttgttccgtttacgctaccgctctaattgttgacttcctt-atgaannnnnnnncttgtattttgttgtgttaa-cgcttttactttgagatcgag |
296 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||| | ||| |||| ||||||||| ||| | ||||||||||| ||||||||| |
|
|
| T |
18787460 |
gagtttgttctgtttacgctactgctctaattgttgacttcctttaggaatttgttttcttggattttgttgagttgatcgcttttacttcgagatcgag |
18787361 |
T |
|
| Q |
297 |
aattagtgtccagattcatgttttttcggttgattatggtgtcttccctgatggaccagaaattaaggagtgtcttagtgatttcgcgtatggtggatcg |
396 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||| || |
|
|
| T |
18787360 |
aattagtgtctagtttcatgttttttcggttgattatggtgtcttctctgatggaccagaaactaaggagtgttttagtgatttcgcgtatggtggaccg |
18787261 |
T |
|
| Q |
397 |
atcacttttgattcgagatcagagtctgttttctagactcaagtttttggtagtggaatctgaatgagtggtggaataaggcattttcgggtgtttaatt |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18787260 |
atcacttttgattcgagatcagagtctgttttctagactcaaatttttggtagtggaatctaaatgagtggtggaataagacattttcgggtgtttaatt |
18787161 |
T |
|
| Q |
497 |
ggacttagctatagtgatga |
516 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18787160 |
ggacttagctatagtgatga |
18787141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 419
Target Start/End: Original strand, 27905427 - 27905459
Alignment:
| Q |
387 |
tggtggatcgatcacttttgattcgagatcaga |
419 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
27905427 |
tggtggaccgatcacttttgattcgagatcaga |
27905459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Complemental strand, 9584119 - 9584090
Alignment:
| Q |
387 |
tggtggatcgatcacttttgattcgagatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
9584119 |
tggtggatcgatcacttttgattcgagatc |
9584090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 416
Target Start/End: Complemental strand, 33144015 - 33143986
Alignment:
| Q |
387 |
tggtggatcgatcacttttgattcgagatc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
33144015 |
tggtggatcgatcacttttgattcgagatc |
33143986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 513
Target Start/End: Complemental strand, 31122852 - 31122783
Alignment:
| Q |
444 |
tggtagtggaatctgaatgagtggtggaataaggcattttcgggtgtttaattggacttagctatagtga |
513 |
Q |
| |
|
|||| ||||||||||||| ||| |||||||| | |||||||| ||| ||||||| |||||| ||| |||| |
|
|
| T |
31122852 |
tggtggtggaatctgaattagttgtggaatatgtcattttcgagtgcttaattgaacttagatatggtga |
31122783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 17657071 - 17657039
Alignment:
| Q |
384 |
gtatggtggatcgatcacttttgattcgagatc |
416 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
17657071 |
gtatggtgggtcgatcacttttgattcgagatc |
17657039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 446
Target Start/End: Complemental strand, 28765668 - 28765609
Alignment:
| Q |
387 |
tggtggatcgatcacttttgattcgagatc-agagtctgttttctagactcaagtttttgg |
446 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||| | ||||| |||| |||||||||| |
|
|
| T |
28765668 |
tggtggattgatcacttttgattcgagatcgagagtcag-tttcttgacttaagtttttgg |
28765609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 395 - 446
Target Start/End: Complemental strand, 39041332 - 39041281
Alignment:
| Q |
395 |
cgatcacttttgattcgagatca-gagtctgttttctagactcaagtttttgg |
446 |
Q |
| |
|
||||||||||||||||||||||| ||||| | |||||||||||||||| |||| |
|
|
| T |
39041332 |
cgatcacttttgattcgagatcaggagtcag-tttctagactcaagttgttgg |
39041281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4722 times since January 2019
Visitors: 4838