View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_68 (Length: 239)
Name: NF0738_low_68
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_68 |
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Alignment Details
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 16088531 - 16088597
Alignment:
| Q |
29 |
aattccaacctgcttttgcaatcaccaacgtgaaatccatcattccaatcacgttggataatgatct |
95 |
Q |
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| T |
16088531 |
aattccaacctgcttttgcaatcaccaacgtgaaatccatcattccaatcacgttggataatgatct |
16088597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 7328528 - 7328471
Alignment:
| Q |
29 |
aattccaacctgcttttgcaatcaccaacgtgaaatccatcattccaatcacgttgga |
86 |
Q |
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| T |
7328528 |
aattccactctgcttttggaatcaccaacgtgaaatccatcattccaatcacgttgga |
7328471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 239
Target Start/End: Complemental strand, 42512440 - 42512377
Alignment:
| Q |
176 |
tcagactacattaattcaatgaactttgacacccttccataattctattgcaagaaatttccac |
239 |
Q |
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| T |
42512440 |
tcaggctacattaatgcaatgaacttggacacccttctatagttctattgcaagaaatttccac |
42512377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 1664378 - 1664442
Alignment:
| Q |
29 |
aattccaacctgcttttgcaatcaccaacgtgaaatccatcattccaatcacgttggataatgat |
93 |
Q |
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| T |
1664378 |
aattccacactgcttttgcaatcaccaacgtgaaatccatcattccaatcacgttggataatgat |
1664442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 28556398 - 28556455
Alignment:
| Q |
29 |
aattccaacctgcttttgcaatcaccaacgtgaaatccatcattccaatcacgttgga |
86 |
Q |
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| T |
28556398 |
aattccactctgcttttggaatcaccaacgtgaaatccatcattccaatcacgttgga |
28556455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 28549217 - 28549274
Alignment:
| Q |
29 |
aattccaacctgcttttgcaatcaccaacgtgaaatccatcattccaatcacgttgga |
86 |
Q |
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| T |
28549217 |
aattccactctgcttttggaatcaccaacgtgaaatccatcattacaatcacgttgga |
28549274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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