View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_7 (Length: 483)
Name: NF0738_low_7
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 87 - 453
Target Start/End: Original strand, 6200953 - 6201320
Alignment:
| Q |
87 |
caaatggcaaatcattatcatattcccttctaatgaacttggagatatcttcctcggttgagccacttttctcattcaattccttcactgctttctttat |
186 |
Q |
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| T |
6200953 |
caaatggcaaatcattatcatattcccttctgatgaacttggagatatcttcctcggttgagccacttttctcattcaattccttcactgctctctttat |
6201052 |
T |
|
| Q |
187 |
catctacatacaaaattaaaataataaaaacttgttagattt-attaatagattcaaatatattgacataaacaaaagaaaataaagaaagagttatttc |
285 |
Q |
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| T |
6201053 |
catctacatacaaaattaaaataataaaaacttgttaggttttattaatagattcaaatatattgacataaacaaaagtaaataaagaaagagttatttc |
6201152 |
T |
|
| Q |
286 |
taaccgagtcataaggagggtgggtagggaatttgaaaactcgtagaagacatttgttaaggagggaagagaggaatggacagtggatcgtggagctggg |
385 |
Q |
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| T |
6201153 |
taaccgagtcataaggagggtgggtagggaatttgaaaactcgtagaagacatttgttaaggagggaagagaggaatggacagtggatcgtggagctggg |
6201252 |
T |
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| Q |
386 |
ttctaatgctgcaatacgtaacaagagagacttcatgctttgatcttgcatcattgtgtgcctctgtg |
453 |
Q |
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| T |
6201253 |
ttctaatgatgcaatacgtaacaagagagacttcatgctttgatcttgcatcattgtgtgcctctgtg |
6201320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 152; Significance: 3e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 95 - 450
Target Start/End: Original strand, 43367252 - 43367613
Alignment:
| Q |
95 |
aaatcattatcatattcccttctaatgaacttggagatatcttcctcggttgagccacttttctcattcaattccttcactgctttctttatcatctaca |
194 |
Q |
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| T |
43367252 |
aaatctttatcatattgccttctaataaactcggagattgcttcctcagtcaagccacttttctcatccaactccttcatcgctctctttatcatctacg |
43367351 |
T |
|
| Q |
195 |
tacaaaattaaaataataaaaacttgtta------gatttattaatagattcaaatatattgacataaacaaaagaaaataaagaaagagtta-tttcta |
287 |
Q |
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| T |
43367352 |
taattaacaaaaaata-aaaaacttgtgatgagaggttttatttataaattcaaatcaattgacataaacaaaagaaaataaagaaagagttagtttcta |
43367450 |
T |
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| Q |
288 |
accgagtcataaggagggtgggtagggaatttgaaaactcgtagaagacatttgttaaggagggaagagaggaatggacagtggatcgtggagctgggtt |
387 |
Q |
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|||||||||||||||||||| || ||| ||||||||| |||| ||||||| | ||||| |||||| ||||||| |||||||||||||||| ||||||||| |
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| T |
43367451 |
accgagtcataaggagggtgagtgggggatttgaaaattcgttgaagacaatggttaacgagggaggagaggagtggacagtggatcgtgtagctgggtt |
43367550 |
T |
|
| Q |
388 |
ctaatgctgcaatacgtaacaagagagacttcatgctttgatcttgcatcattgtgtgcctct |
450 |
Q |
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| T |
43367551 |
ctaatgctgcaatacgcaacaagagagacttcatcctttgatcttgcagcatggtgtgcctct |
43367613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 200
Target Start/End: Original strand, 18840702 - 18840798
Alignment:
| Q |
104 |
tcatattcccttctaatgaacttggagatatcttcctcggttgagccacttttctcattcaattccttcactgctttctttatcatctacatacaaa |
200 |
Q |
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|||||||||||||||||||| | ||||| || |||| || ||||||| || |||||||| ||||| | |||||| ||||||||||||| ||||| |
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| T |
18840702 |
tcatattcccttctaatgaattcagagattgctgcctcagtcgagccacattcgtcattcaactccttgattgctttgtttatcatctacacacaaa |
18840798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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