View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0738_low_76 (Length: 217)
Name: NF0738_low_76
Description: NF0738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0738_low_76 |
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Alignment Details
Target: chr5 (Bit Score: 92; Significance: 7e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 39120111 - 39120245
Alignment:
| Q |
1 |
tggcactacaatactgcaagtcactctgccacaggtttgtctgcgtttcaggttgtctatagttgcaaacccccct------ccctgtcccactatgttt |
94 |
Q |
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| T |
39120111 |
tggcactacgatactgcaagtcactctgccacaagtttgtctgcgtttcaggttgtatatagtcgcaaacccccctccctgaccctgtcccactatgttt |
39120210 |
T |
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| Q |
95 |
ccaactccataatcagaaggtcctgaaccaagaat |
129 |
Q |
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| T |
39120211 |
ccaactccataatcagcaggtcctgaaccaagaat |
39120245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 5 - 124
Target Start/End: Complemental strand, 38611453 - 38611334
Alignment:
| Q |
5 |
actacaatactgcaagtcactctgccacaggtttgtctgcgtttcaggttgtctatagttgcaaacccccctccctgtcccactatgtttccaactccat |
104 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |||| || ||||||||||| ||||||||||||||||| |
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| T |
38611453 |
actacaatacagcaagtcactctgccacaggtttgtctgtgtttcaggttgtctatagtcgcgaaccaccttccctgtcccattatgtttccaactccat |
38611354 |
T |
|
| Q |
105 |
aatcagaaggtcctgaacca |
124 |
Q |
| |
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|||||| |||||||| |||| |
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| T |
38611353 |
aatcagcaggtcctggacca |
38611334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 39117903 - 39118030
Alignment:
| Q |
1 |
tggcactacaatactgcaagtcactctgccacaggtttgtctgcgtttcaggttgtctatagttgcaaacccccctccctgtcccactatgtttccaact |
100 |
Q |
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||||||| |||||| | |||||||||||||||||| ||||||| |||||||||||| |||||| || |||| |||||||||||||| | ||||||||||| |
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| T |
39117903 |
tggcacttcaatacaggaagtcactctgccacagggttgtctgtgtttcaggttgtttatagtcgcgaaccaccctccctgtcccattctgtttccaact |
39118002 |
T |
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| Q |
101 |
ccataatcagaaggtcctgaaccaagaa |
128 |
Q |
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|||||||| | |||||||| |||||||| |
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| T |
39118003 |
ccataatctgcaggtcctgtaccaagaa |
39118030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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